DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec22 and vamp5

DIOPT Version :9

Sequence 1:NP_001259103.1 Gene:Sec22 / 31030 FlyBaseID:FBgn0260855 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001243535.1 Gene:vamp5 / 325484 ZFINID:ZDB-GENE-030131-4209 Length:112 Species:Danio rerio


Alignment Length:101 Identity:21/101 - (20%)
Similarity:49/101 - (48%) Gaps:19/101 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 IQKAKKQLTDRRRNISNINTQLQDVQRIMVQNIDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAK 185
            :|....:|::.::::       ::|:.||:.|::...:|...|.||:|:..:|.:..:.:.|.|.
Zfish     1 MQNGNSRLSEAQKDV-------EEVKGIMLDNLNKAEERSGKLKELETRADDLLVKGKAFSKTAT 58

  Fly   186 LLNRKSMY------------VKAMALGMILLVFIMY 209
            .:.:|..:            ..|:.||:||.|.:.:
Zfish    59 KVKQKKRWENIKYKVVIAAVAAAVLLGIILAVALSF 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec22NP_001259103.1 SNC1 10..192 CDD:227472 15/70 (21%)
Longin 39..105 CDD:290490
R-SNARE_SEC22 132..195 CDD:277219 13/74 (18%)
vamp5NP_001243535.1 Synaptobrevin 4..92 CDD:279324 20/94 (21%)
R-SNARE_VAMP5 5..72 CDD:277225 14/73 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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