DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec22 and snb-2

DIOPT Version :9

Sequence 1:NP_001259103.1 Gene:Sec22 / 31030 FlyBaseID:FBgn0260855 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_506093.2 Gene:snb-2 / 179692 WormBaseID:WBGene00004898 Length:114 Species:Caenorhabditis elegans


Alignment Length:89 Identity:19/89 - (21%)
Similarity:46/89 - (51%) Gaps:5/89 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   129 TDRRRNISNINTQLQDVQRIMVQNIDDVLQRGTVLAELDTKTQNLSMMSQKYKKDAKLLNRKSMY 193
            |...:.:.....|:.:|..:|..|::.|::|...|..||.:.:.|...:.::::.::.|.:|..:
 Worm    24 TYNTKRMQMAQAQVNEVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWW 88

  Fly   194 --VKAM-ALGMI--LLVFIMYFWV 212
              ::.| .:|:|  |::.|...|:
 Worm    89 QNIRMMIIIGLIAFLVIGIFLIWI 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec22NP_001259103.1 SNC1 10..192 CDD:227472 13/62 (21%)
Longin 39..105 CDD:290490
R-SNARE_SEC22 132..195 CDD:277219 12/64 (19%)
snb-2NP_506093.2 R-SNARE_VAMP2 28..90 CDD:277223 12/61 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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