DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and PMT4

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_012677.1 Gene:PMT4 / 853608 SGDID:S000003904 Length:762 Species:Saccharomyces cerevisiae


Alignment Length:825 Identity:239/825 - (28%)
Similarity:369/825 - (44%) Gaps:175/825 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VKTPKCPRRG----SVKDV-------AQNAPR---------TAPTSSKEANWNWWLLLATVFLVT 50
            :..||....|    |.|||       .:.||:         ..|....|:.:::|:.:.|  |:.
Yeast     1 MSVPKKRNHGKLPPSTKDVDDPSLKYTKAAPKCEQVAEHWLLQPLPEPESRYSFWVTIVT--LLA 63

  Fly    51 FATRFYKVTEPDHICWDETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSGYLTGYNGTFPFEKPG 115
            ||.||||:..|..:.:||.||||..|:|:.|::|||||||..||:|...|:|.||:|:|.|::.|
Yeast    64 FAARFYKIWYPKEVVFDEVHFGKFASYYLERSYFFDVHPPFAKMMIAFIGWLCGYDGSFKFDEIG 128

  Fly   116 DKYNETR---YQGMRYFCTTLGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYILL 177
            ..| ||.   |...|.|...||.|.:|:.|:|:.:|.........|:..:..|...:|..:.|||
Yeast   129 YSY-ETHPAPYIAYRSFNAILGTLTVPIMFNTLKELNFRAITCAFASLLVAIDTAHVTETRLILL 192

  Fly   178 DPILLFFMMASVWGMVKVSKSTASGGSYGLR------WWLWLFLTGTMLSCTISVKFVGLFVVLL 236
            |.||:..:.|:::..|:..|..       ||      |::||..||..||..||.|:||:.....
Yeast   193 DAILIISIAATMYCYVRFYKCQ-------LRQPFTWSWYIWLHATGLSLSFVISTKYVGVMTYSA 250

  Fly   237 VGLHTATELWLILGDL--GQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFY 299
            :|......||.:| |:  |..:.:.::..:.|...|::.|.::|:.:|::|.:|||.||.||.|.
Yeast   251 IGFAAVVNLWQLL-DIKAGLSLRQFMRHFSKRLNGLVLIPFVIYLFWFWVHFTVLNTSGPGDAFM 314

  Fly   300 SSAFQSRLIGNSLYNASMPRDVAYGSLVTIKNHKTGGGYLHSHHHLYPK--------GSGARQQQ 356
            |:.||..|..:.|...|  :.|.|..::||| |:....:||||...||:        .:|   ||
Yeast   315 SAEFQETLKDSPLSVDS--KTVNYFDIITIK-HQDTDAFLHSHLARYPQRYEDGRISSAG---QQ 373

  Fly   357 VTTYTHKDENNKW-LIRPHNKPGPPKGKVQILRHGDLVRLTHMATRRNLHSHNEPAPMTKKHLQV 420
            ||.|||.|.||:| ::.||   |...||.|.:.....:||.|:||...|.:|:..:|....:.::
Yeast   374 VTGYTHPDFNNQWEVLPPH---GSDVGKGQAVLLNQHIRLRHVATDTYLLAHDVASPFYPTNEEI 435

  Fly   421 T------GYGELGLGDANDVWRVLIVGGKVNETVHTVTSR---LKFIHLLQNCAL-TSSGKQLPK 475
            |      |.||| ..:....::.|    |.::..|.:.|:   .:..|:..:.|| |.:.:.||.
Yeast   436 TTVTLEEGDGEL-YPETLFAFQPL----KKSDEGHVLKSKTVSFRLFHVDTSVALWTHNDELLPD 495

  Fly   476 WGFEQQEVSCNPNVRDKNSQWNVE-----DNEHKLMPSVSFSVYAP------GFFARFLESHAVM 529
            |||:|||::.|..|.|.::.|.|:     |...|        ||.|      .|..:::|:...|
Yeast   496 WGFQQQEINGNKKVIDPSNNWVVDEIVNLDEVRK--------VYIPKVVKPLPFLKKWIETQKSM 552

  Fly   530 LQGNAGLKPKEGEVTSRPWQWPINYRGQFF---SGSSYRIYLLGNPLIWWSNLVFLALFVTVFLC 591
            .:.|..|. .|....|.|:.||.:..|..|   .....:||.:||.:.||..::.||:||.:.:.
Yeast   553 FEHNNKLS-SEHPFASEPYSWPGSLSGVSFWTNGDEKKQIYFIGNIIGWWFQVISLAVFVGIIVA 616

  Fly   592 NAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAKEIVPKAVPSGSPEAPN 656
            :.:.:.|  |:   .|.|:                         .|..|...|            
Yeast   617 DLITRHR--GY---YALNK-------------------------MTREKLYGP------------ 639

  Fly   657 PAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLLTGVMYNYI------------- 708
                   ..:.|:.|..||.||:.|.|..:.|||.||.:...|.:|.::..|             
Yeast   640 -------LMFFFVSWCCHYFPFFLMARQKFLHHYLPAHLIACLFSGALWEVIFSDCKSLDLEKDE 697

  Fly   709 ------------LRVLPKWIHHVILGLVLSILVYSFAAFSPLAYG 741
                        :.|.|   :.|.|..|...:.:.|..||||.||
Yeast   698 DISGASYERNPKVYVKP---YTVFLVCVSCAVAWFFVYFSPLVYG 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 227/770 (29%)
PMT 44..290 CDD:280519 88/256 (34%)
MIR 318..374 CDD:197746 24/64 (38%)
MIR 385..440 CDD:197746 15/60 (25%)
MIR 446..501 CDD:197746 19/63 (30%)
PMT_4TMC 518..763 CDD:292810 57/252 (23%)
PMT4NP_012677.1 PMT1 32..755 CDD:224839 230/794 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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