DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and PMT5

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_010190.1 Gene:PMT5 / 851464 SGDID:S000002251 Length:743 Species:Saccharomyces cerevisiae


Alignment Length:797 Identity:219/797 - (27%)
Similarity:357/797 - (44%) Gaps:130/797 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SVVKTPKCPRRGSVKDVAQNAPRTAPTSSKEANWNWWLLLATVFLVTFATRFYKVTEPDHICWDE 68
            |.:.|..|....|::.|         |||||.     ||:..:.:.|...|.:.::.|:.:.:.|
Yeast    24 SFLITKPCDNLSSLRTV---------TSSKEK-----LLVGCLLIFTAIVRLHNISLPNSVVFGE 74

  Fly    69 THFGKMGSWYINRTFFFDVHPPLGKMLIGLSGYLTGYNGTFPFEKPGDKYN-ETRYQGMRYFCTT 132
            ...|...|.|:|..||.||||||..||......:.||.|.|.:...|.:|. ...|..||:|..|
Yeast    75 NEVGTFVSQYVNNIFFTDVHPPLVAMLYATVSSVFGYKGLFNYGNIGTEYTANVPYVAMRFFSAT 139

  Fly   133 LGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVW------- 190
            ||.:.:.:.:.|:.........|.:.|.....:...:||:::.|::...:|||..:|:       
Yeast   140 LGIVSVLVLYLTLRVSGVKIAVAAICAVCFAIENSFVTLSRFTLIEGPFVFFMACAVYFFRRSEL 204

  Fly   191 ---GMVKVSKSTASGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILGDL 252
               ...|.:||              |......|...:|.|:.|||.:...|:.....:|.::|||
Yeast   205 YLPNSCKANKS--------------LLAASIALGFAVSSKWAGLFTIAWAGIIVLWRVWFMIGDL 255

  Fly   253 GQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYSSAFQSRLIGNSLYNASM 317
            .:||..::|.:|.:...|:..|..:|.|.|.:|:..||.:|....|:.:.|:..|..|::...::
Yeast   256 SRPIGSSIKYMAFQFTCLLAIPAFIYFLIFSVHIKTLNVNGISSSFFPAEFRKTLKYNNVIKETV 320

  Fly   318 PRDVAYGSLVTIKNHKTGGGYLHSHHHLYPKGSGARQQQVTTYTHKDENNKWLIRPHNKPGPPKG 382
             .:||.||.|::.:..|.|||||||.|.||.||  .|||||.|.|.|:||||:|.....|.....
Yeast   321 -AEVAVGSAVSLNHVGTAGGYLHSHLHNYPAGS--MQQQVTLYPHIDQNNKWIIELAEHPNENVT 382

  Fly   383 KVQILRHGDLVRLTHMATRRNLHSHNEPAPMTKK---HLQVTGYGELGL-GDANDVWRVLI---- 439
            ..|.|..|.:::|..:.....||||:...|:::.   ..:|:.||..|. ||.||.|.:.|    
Yeast   383 SFQNLTDGTIIKLRQLKNGCRLHSHDHKPPVSQNADWQKEVSCYGYEGFEGDINDDWIIEIDKKR 447

  Fly   440 -VGGKVNETVHTVTSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRDKNSQWNVEDNEH 503
             ..|...|.:..:.::.:..|.|..|.|.|..::||:|||.||||:|....|:..:.|.:|:||:
Yeast   448 SEPGPAQEHIRAIETKFRLKHYLTGCYLFSHPEKLPEWGFGQQEVTCAYFAREDLTSWYIEENEN 512

  Fly   504 KL-MPS---VSFSVYAPGFFARFLESHAVMLQGNAGLKPKEGEVTSRPWQWPINYRG-QFFSGSS 563
            :: :|:   ||:...:  |:.:|:..|..|...|..:..... .:|.|..||:..|| .|::.:.
Yeast   513 EISLPNPEKVSYKKMS--FWQKFVAIHKFMFYLNNYMDTSHA-YSSEPKTWPLMLRGIDFWNENG 574

  Fly   564 YRIYLLGNPLIWWSNLVFLALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHS 628
            ..:|.|||.::|||        ||.|:|..::     |.|......:..|    .:.:|      
Yeast   575 REVYFLGNAVLWWS--------VTAFICTFII-----GVAVELLAWKLGV----NILRD------ 616

  Fly   629 TTDICSCCTPAKEIVPKAVPSGSPEAPNPAQSLRAAAWLF-LGWMLHYLPFWAMGRVLYFHHYFP 692
                       |.|:                :.....:.: ||:..||.|::.:|:.|:.:.|.|
Yeast   617 -----------KHII----------------NFHYQVFQYLLGFAAHYFPYFFVGQKLFLYDYLP 654

  Fly   693 ALIFNSLLTGVMYNYILRVLPKWIH-------HVILGLVLSILVYSFAAFSPLAY--GMSGPLAN 748
            |..|..|..|    :.|.::..:|.       ::::.:.:.:..|.|:..|||.|  |.|..|..
Yeast   655 AYYFGILAFG----HALDLISTYISNKRNNTGYIVVAIFMVVCFYFFSEHSPLIYATGWSSNLCK 715

  Fly   749 EPNSTMYNLKWLSTWEF 765
            ..       |||.:|:|
Yeast   716 RS-------KWLGSWDF 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 208/758 (27%)
PMT 44..290 CDD:280519 66/256 (26%)
MIR 318..374 CDD:197746 31/55 (56%)
MIR 385..440 CDD:197746 19/63 (30%)
MIR 446..501 CDD:197746 19/54 (35%)
PMT_4TMC 518..763 CDD:292810 56/255 (22%)
PMT5NP_010190.1 PMT1 22..729 CDD:224839 219/797 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002698
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101353
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2235
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.740

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