DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and PMT2

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_009379.2 Gene:PMT2 / 851210 SGDID:S000000021 Length:759 Species:Saccharomyces cerevisiae


Alignment Length:789 Identity:267/789 - (33%)
Similarity:386/789 - (48%) Gaps:108/789 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SVKDVAQNA-PRTAPTSSKE---ANWNWWLLLATVFLVTFA-----TRFYKVTEPDHICWDETHF 71
            ||.:...:| .|.|...|||   |..:...|.:.|..|.|.     ||.||:...:|:.|||.||
Yeast    32 SVSEELSSADERDAEDFSKEKPAAQSSLLRLESVVMPVIFTALALFTRMYKIGINNHVVWDEAHF 96

  Fly    72 GKMGSWYINRTFFFDVHPPLGKMLIGLSGYLTGYNGTFPFEKPGDKYNE-TRYQGMRYFCTTLGA 135
            ||.||:|:...|:.||||||||||:||||||.||||::.|.. |:.|.: ..|..||.|..:..|
Yeast    97 GKFGSYYLRHEFYHDVHPPLGKMLVGLSGYLAGYNGSWDFPS-GEIYPDYLDYVKMRLFNASFSA 160

  Fly   136 LIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVWGMVKVSKSTA 200
            |.:|:.:.|...:..|.....|....::|:....||.::||||.:||||.:||.:..|......:
Yeast   161 LCVPLAYFTAKAIGFSLPTVWLMTVLVLFENSYSTLGRFILLDSMLLFFTVASFFSFVMFHNQRS 225

  Fly   201 SGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILGDLGQPILETVKQLAC 265
            .  .:..:||.||.:||..|.||||||.||||::.:||::|..:||..|.|........:.....
Yeast   226 K--PFSRKWWKWLLITGISLGCTISVKMVGLFIITMVGIYTVIDLWTFLADKSMSWKTYINHWLA 288

  Fly   266 RAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYSSAFQSRLIGNSLYNASMPRDVAYG-SLVTI 329
            |...||:.|..:::|.|.||..:|:.||.||....|.||:||:|:.:  ...|||:|.| |:|:|
Yeast   289 RIFGLIIVPFCIFLLCFKIHFDLLSHSGTGDANMPSLFQARLVGSDV--GQGPRDIALGSSVVSI 351

  Fly   330 KNHKTGGGYLHSHHHLYPKGSGARQQQVTTYTHKDENNKWLIRPHNKPGPP-----KGKVQILRH 389
            ||...||..||||...||.||  .|||||.|.:||.||:|..  :.:.|.|     :..::.|:.
Yeast   352 KNQALGGSLLHSHIQTYPDGS--NQQQVTCYGYKDANNEWFF--NRERGLPSWSENETDIEYLKP 412

  Fly   390 GDLVRLTHMATRRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIV---GGKVNETVHTV 451
            |...||.|.:|.||||:|...||::|...:|:|||:..:||..|.|.:.|:   |.:..|.:||:
Yeast   413 GTSYRLVHKSTGRNLHTHPVAAPVSKTQWEVSGYGDNVVGDNKDNWVIEIMDQRGDEDPEKLHTL 477

  Fly   452 TSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSC--NPNVRDKNSQWNVEDNEHKLMP--SVSFS 512
            |:..:..:|...|.|..:|..||:|||.||||.|  ||..|||.:.||:|.:|::.:|  ...|.
Yeast   478 TTSFRIKNLEMGCYLAQTGNSLPEWGFRQQEVVCMKNPFKRDKRTWWNIETHENERLPPRPEDFQ 542

  Fly   513 VYAPGFFARFLESHAVMLQGNAGLKP---KEGEVTSRPWQWP---INYRGQFFSGSSYRIYLLGN 571
            .....|...|:..:..|:..|..|.|   |...:.|..||||   :..|...:...:.:.:|||.
Yeast   543 YPKTNFLKDFIHLNLAMMATNNALVPDPDKFDYLASSAWQWPTLNVGLRLCGWGDDNPKYFLLGT 607

  Fly   572 PLIWWSNLVFLALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCC 636
            |...|::.|.:..|:...:...:..||:....|                                
Yeast   608 PASTWASSVAVLAFMATVVILLIRWQRQYVDLR-------------------------------- 640

  Fly   637 TPAKEIVPKAVPSGSPEAPNPAQ---SLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNS 698
                               ||:.   .|....:..|.|.|||:||..|.||.|.|||.|||.|..
Yeast   641 -------------------NPSNWNVFLMGGFYPLLAWGLHYMPFVIMSRVTYVHHYLPALYFAL 686

  Fly   699 LLTGVMYNYILRVLPKW--------IHHVILGLVLSILVYSFAAFSPLAYGMSGPLANEPNSTMY 755
            ::....::   ..|.||        :..|:....:::::..|..|||:::||.|     |:|...
Yeast   687 IILAYCFD---AGLQKWSRSKCGRIMRFVLYAGFMALVIGCFWYFSPISFGMEG-----PSSNFR 743

  Fly   756 NLKWLSTWE 764
            .|.|.|||:
Yeast   744 YLNWFSTWD 752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 258/760 (34%)
PMT 44..290 CDD:280519 98/251 (39%)
MIR 318..374 CDD:197746 31/56 (55%)
MIR 385..440 CDD:197746 22/54 (41%)
MIR 446..501 CDD:197746 26/56 (46%)
PMT_4TMC 518..763 CDD:292810 60/261 (23%)
PMT2NP_009379.2 PMT1 44..757 CDD:224839 263/777 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346595
Domainoid 1 1.000 192 1.000 Domainoid score I625
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5297
Inparanoid 1 1.050 442 1.000 Inparanoid score I260
Isobase 1 0.950 - 0 Normalized mean entropy S1660
OMA 1 1.010 - - QHG52910
OrthoFinder 1 1.000 - - FOG0002698
OrthoInspector 1 1.000 - - otm46883
orthoMCL 1 0.900 - - OOG6_101353
Panther 1 1.100 - - LDO PTHR10050
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2235
SonicParanoid 1 1.000 - - X3468
TreeFam 1 0.960 - -
1615.740

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