DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and pomt1

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001041532.2 Gene:pomt1 / 569769 ZFINID:ZDB-GENE-060929-966 Length:720 Species:Danio rerio


Alignment Length:780 Identity:234/780 - (30%)
Similarity:374/780 - (47%) Gaps:138/780 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LLLATVFLVTFATRFYKVTEPDHICWDETHFGKMGSWYINRTFFFDVH-PPLGKMLIGLSGYLTG 104
            ||||...|..| ||.|.:..|..:.:||.::|:..|.|:.:.||.|.. ||.|.|::.|..||.|
Zfish    17 LLLAVTALALF-TRLYGIHFPKAVVFDEVYYGQFLSLYMKQVFFIDESGPPFGHMILALGAYLGG 80

  Fly   105 YNGTFPFEKPGDKY-NETRYQGMRYFCTTLGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGL 168
            ::|.|.:.:.|.:| .......:|......|:..:|:.:..|.:|..||.:||.|.|.|:.:..|
Zfish    81 FDGNFVWNRIGAEYPGNVPVWSLRLIPALAGSFCVPLAYLVVVELGYSHFSALGACALLLMEDSL 145

  Fly   169 LTLNQYILLDPILLFFMMASVWGMVKVSKSTASGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFV 233
            :..::::||:.:|:||::.:|...::..|:..|...     |.||.:.|...:..|.||::|:|.
Zfish   146 IVQSRFMLLESVLIFFLLLAVLSYLRFHKARNSSFK-----WFWLVICGVSCAFGIGVKYMGMFT 205

  Fly   234 VLLVGLHTATELWLILGDLGQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGF 298
            ..|:....|...|.::||......:.:..:..|.:.|:|.||::|:.||||||::|.|||..|..
Zfish   206 YFLLLSQAAVHTWQLIGDRTLSHGKVMFHVLVRFLALVVLPVIMYLGFFYIHLTLLYRSGPHDQM 270

  Fly   299 YSSAFQSRLIGN-SLYNASMPRDVAYGSLVTIKNHKTGGG-----YLHSHHHLYP------KGSG 351
            .|||||:.|.|. :......|.|||:||.||:   :|..|     :||||...||      :|| 
Zfish   271 MSSAFQASLEGGLARITQGQPLDVAFGSQVTL---RTVSGKPVPCWLHSHKANYPIRYENGRGS- 331

  Fly   352 ARQQQVTTYTHKDENNKWLIRPHNKPG--------PPKGKVQILRHGDLVRLTHMATRRNLHSHN 408
            :.|||||.|..||.||.|:|:   .||        ||:.    :|.||:::|.|..|.|.|::|:
Zfish   332 SHQQQVTCYPFKDVNNWWIIK---DPGRQSLVVSSPPRP----VRRGDIIQLLHGMTTRYLNTHD 389

  Fly   409 EPAPMTKKHLQVTGYGELGLG-DANDVWRVLIVGGKVNETV-HTVTSRLKFIHLLQNCALTSSGK 471
            ..|||:....:|:||.:..:. .|.::|||.||..:..:.: .|:.|.::.:|:..:..|..||.
Zfish   390 VAAPMSPHSQEVSGYIDFNVSMPAQNLWRVDIVNRESEKEIWKTILSEVRLVHVNTSAVLKLSGA 454

  Fly   472 QLPKWGFEQQEVSCNPNVRDK-------NSQWNVEDNEHKLMPSV-----SFSVYAP-------- 516
            .||:|||:|.||     |.||       ...||||  ||:...|.     ...:.:|        
Zfish   455 SLPEWGFKQLEV-----VGDKIYKGYQQTGMWNVE--EHRYGRSQEPKERELELKSPTHSDVNKN 512

  Fly   517 -GFFARFLESHAVMLQGNAGLKPKEGE--VTSRPWQW---PINYRGQFFSGSSYRIYLLGNPLIW 575
             .|.|:|||....||.    :|.:|.|  .:|.|.:|   ..|........|:.:|:.:||.:.|
Zfish   513 LTFMAKFLELQWKMLT----VKNEESEHKYSSSPLEWITMDTNIAYWLHPSSNAQIHFIGNIVTW 573

  Fly   576 WSNLVFLALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAK 640
            .:..:.|.::..:|| ..::::||            :|.|                         
Zfish   574 TTGNITLVVYCLLFL-TYLIRRRR------------KVED------------------------- 600

  Fly   641 EIVPKAVPSGSPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSL----LT 701
                  :|..|.|     |.:.|....|.||.::||||:.|.:.|:.:||.|||.|..|    :|
Zfish   601 ------IPQDSWE-----QLVLAGVVCFGGWAVNYLPFFLMEKTLFLYHYLPALTFKILQIPIVT 654

  Fly   702 GVMYNYILR--VLPKWIHHVILGLVLSILVYSFAAFSPLAYGMSGPLANEPNSTMYNLKWLSTWE 764
            ..:|.::||  ...|....|||.::.|:.: |:.:.|||.||.....:::    :..|:|..:|:
Zfish   655 EHLYIHVLRSSAQQKAFGGVILAVLCSVYM-SYHSLSPLTYGQPALTSDK----LAELRWRESWD 714

  Fly   765  764
            Zfish   715  714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 234/780 (30%)
PMT 44..290 CDD:280519 74/247 (30%)
MIR 318..374 CDD:197746 30/66 (45%)
MIR 385..440 CDD:197746 19/55 (35%)
MIR 446..501 CDD:197746 21/62 (34%)
PMT_4TMC 518..763 CDD:292810 64/255 (25%)
pomt1NP_001041532.2 PMT1 27..715 CDD:224839 229/770 (30%)
PMT 27..262 CDD:280519 72/240 (30%)
MIR 293..351 CDD:197746 28/61 (46%)
MIR 365..422 CDD:197746 20/60 (33%)
MIR 436..486 CDD:197746 20/56 (36%)
PMT_4TMC 515..713 CDD:292810 64/255 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D101190at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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