DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and pomt2

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001038498.1 Gene:pomt2 / 563878 ZFINID:ZDB-GENE-070112-1002 Length:756 Species:Danio rerio


Alignment Length:776 Identity:385/776 - (49%)
Similarity:513/776 - (66%) Gaps:71/776 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PKCPRRGSVKDVAQNAPR-------TAPTSSKEANWNWWLLLATVFLVTFATRFYKVTEPDHICW 66
            |..|..|::..|.:...:       ::|  |::|:...: :||.|.:::.:|||||:|||.|:||
Zfish    33 PSQPHNGTINGVNKRITKREGGERISSP--SRDAHVPVF-ILALVIVLSVSTRFYKITEPPHVCW 94

  Fly    67 DETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSGYLTGYNGTFPFEKPGDKYNETRYQGMRYFCT 131
            ||||||||||:|||||||||||||||||||||:||||||:|||||.||||||....|.|||.||.
Zfish    95 DETHFGKMGSYYINRTFFFDVHPPLGKMLIGLAGYLTGYDGTFPFIKPGDKYEHHNYWGMRAFCA 159

  Fly   132 TLGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVWGMVKVS 196
            .||:.:.|..|..|.:|::|..|||:||:.||||.|.:||:|||||||||:||:|.||..|||. 
Zfish   160 ALGSCLPPFAFLVVLELSQSSTAALIAASLLIFDTGCITLSQYILLDPILMFFIMGSVLCMVKF- 223

  Fly   197 KSTASGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILGDLGQPILETVK 261
             :|...|.:...||.||.|||..||.::.||||||||:||||::||.:||.:||||...:::..|
Zfish   224 -NTQRLGPFSFSWWFWLLLTGLCLSGSLGVKFVGLFVILLVGINTALDLWRLLGDLSLSLVDFGK 287

  Fly   262 QLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYSSAFQSRLIGNSLYNASMPRDVAYGSL 326
            .|..|...||:.|:.||...|.||..||||||.||||:|||||||||||:.:|||||..:||||:
Zfish   288 HLLARVFGLIMLPLFLYTTIFAIHFIVLNRSGPGDGFFSSAFQSRLIGNNPHNASMPEYLAYGSV 352

  Fly   327 VTIKNHKTGGGYLHSHHHLYPKGSGARQQQVTTYTHKDENNKWLIRPHNKPGPPKGKVQILRHGD 391
            :|:||.:..|||||||.||||:|.||.|||||.|.|||.||.||::..:......|..:::||||
Zfish   353 ITVKNLRIAGGYLHSHWHLYPEGVGAHQQQVTAYLHKDYNNLWLVKRLDNSDDLTGSPELVRHGD 417

  Fly   392 LVRLTHMATRRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIVGGKVNETVHTVTSRLK 456
            ::||.|..|.||||||...||:|||||||||||..|.||.||:|:|.:.||:..:.|..:.|:::
Zfish   418 IIRLEHKETTRNLHSHFHEAPLTKKHLQVTGYGINGSGDVNDLWQVEVCGGRKGDPVKVLRSKVR 482

  Fly   457 FIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRD-KNSQWNVEDNEHKLMPSVSFSVYAPGFFA 520
            |:|....|.|.||||.|||||:||.||:|:|.|:: .|||||:||:.:..:|::|.:|..|.|..
Zfish   483 FLHRATGCVLCSSGKTLPKWGWEQVEVTCSPYVKETPNSQWNIEDHINPKLPNISLAVLKPTFLE 547

  Fly   521 RFLESHAVMLQGNAGLKPKEGEVTSRPWQWPINYRGQFFSG---SSYRIYLLGNPLIWWSNLVFL 582
            ...|||.||::||:|||||:.|::|:||.|||||:|..|||   :.||:||||||:|||.||:.|
Zfish   548 ILWESHIVMIRGNSGLKPKDNEMSSKPWHWPINYQGLRFSGVNETEYRVYLLGNPVIWWLNLLSL 612

  Fly   583 ALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAKEIVPKAV 647
            ||||.:....::..|||.     ..:...:|                    .|.|          
Zfish   613 ALFVILLTVASLAVQRRV-----KMEGMMKV--------------------HCHT---------- 642

  Fly   648 PSGSPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLLTGVMYNYILRVL 712
                        .:.....|||||:||||||:.|||:||:||||||::|:|:|||:..:.:|:.|
Zfish   643 ------------LMEGGGMLFLGWLLHYLPFYIMGRILYYHHYFPAMMFSSMLTGITLDILLQNL 695

  Fly   713 -----PKWIHHVILG---LVLSILVYSFAAFSPLAYGMSGPLANEPNSTMYNLKWLSTWEF 765
                 ....|:::.|   ::|...:|||..|.||:|||.||||::..|:|..|:|:.:|||
Zfish   696 QLLFSSSLSHYLMRGGQSVLLLGFIYSFYLFHPLSYGMRGPLAHDSASSMAGLRWMESWEF 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 376/735 (51%)
PMT 44..290 CDD:280519 146/245 (60%)
MIR 318..374 CDD:197746 35/55 (64%)
MIR 385..440 CDD:197746 34/54 (63%)
MIR 446..501 CDD:197746 28/55 (51%)
PMT_4TMC 518..763 CDD:292810 99/255 (39%)
pomt2NP_001038498.1 PMT1 68..756 CDD:224839 376/737 (51%)
PMT 76..316 CDD:280519 144/241 (60%)
MIR 344..397 CDD:197746 34/52 (65%)
MIR 410..464 CDD:197746 33/53 (62%)
MIR 479..528 CDD:197746 27/48 (56%)
PMT_4TMC 545..754 CDD:292810 99/255 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596213
Domainoid 1 1.000 306 1.000 Domainoid score I1335
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5297
Inparanoid 1 1.050 762 1.000 Inparanoid score I529
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D101190at33208
OrthoFinder 1 1.000 - - FOG0002698
OrthoInspector 1 1.000 - - oto38901
orthoMCL 1 0.900 - - OOG6_101353
Panther 1 1.100 - - LDO PTHR10050
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2235
SonicParanoid 1 1.000 - - X3468
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.790

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