DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and pomt1

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001006756.1 Gene:pomt1 / 448433 XenbaseID:XB-GENE-944435 Length:725 Species:Xenopus tropicalis


Alignment Length:781 Identity:247/781 - (31%)
Similarity:371/781 - (47%) Gaps:149/781 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 LVTFATRFYKVTEPDHICWDETHFGKMGSWYINRTFFF-DVHPPLGKMLIGLSGYLTGYNGTFPF 111
            ::...:|.::::.|..:.:||.::|:..|.|:.|.|:. |..||||.||:.|.||:..::|.|.:
 Frog    24 ILGLVSRLWRLSYPQAVVFDEVYYGQFISLYMKRIFYLDDSGPPLGHMLLALGGYVADFDGNFMW 88

  Fly   112 EKPGDKY-NETRYQGMRYFCTTLGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYI 175
            .:.|.:| :......:|......|||.:|:.:..|.:|..|..|.|.|...|:|:..|:|.::.:
 Frog    89 NRIGAEYSSNVPVWSLRLLPALSGALCVPLAYQIVVELGFSARAGLAAGFLLLFENALITQSRLM 153

  Fly   176 LLDPILLFFMMASVWGMVKVSKSTASGGSYGLRWWLWLFLTGTMLSCT--ISVKFVGLFVVLLVG 238
            ||:.:|:||::.::...:|. ........:.:.||.||.|||  :|||  |.||::|||..||:.
 Frog   154 LLESVLIFFILLALLSYLKF-HGCQRRSPFSVSWWFWLLLTG--ISCTFAIGVKYMGLFSYLLIL 215

  Fly   239 LHTATELWLILGD--LGQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYSS 301
            ...|...|.::||  ||...|  :..|..|.:.|::.|||||:..||:|||:|.|||..|...||
 Frog   216 GVAAVHYWQLIGDQTLGNVWL--LFHLLARCLALLLMPVLLYLGIFYLHLSILTRSGPHDHIMSS 278

  Fly   302 AFQSRLIGN-SLYNASMPRDVAYGSLVTIKN--HKTGGGYLHSHHHLYP------KGSGARQQQV 357
            |||:.|.|. |......|.:|.|||.:|:||  .|....:||||.|.||      :|| :.||||
 Frog   279 AFQASLEGGLSRITEGQPLEVVYGSQITLKNTLGKPVPCWLHSHKHTYPVRYEGGRGS-SHQQQV 342

  Fly   358 TTYTHKDENNKWLIRPHNK-----PGPPKGKVQILRHGDLVRLTHMATRRNLHSHNEPAPMTKKH 417
            |.|.:||.||.|:::...:     ..||:.    :||||.|:|.|..:.|.|::|:..||.:...
 Frog   343 TCYPYKDVNNWWIVKDPARQQMVVDSPPRP----IRHGDTVQLLHGMSARFLNTHDVAAPFSPYS 403

  Fly   418 LQVTGYGELGLG-DANDVWRVLIVGGKVN-ETVHTVTSRLKFIHLLQNCALTSSGKQLPKWGFEQ 480
            .:|:.|.:..:. .|..:|:|.||..:.: :|..|:.|.:|.||:..:.||..||..||.|||.|
 Frog   404 QEVSCYIDYNISMPAQSLWKVEIVNRESDMDTWKTIISEVKLIHVNTSAALKLSGTALPDWGFRQ 468

  Fly   481 QEVSCNPNVRDKNSQ-------WNVEDN-----------EHKLMPSVSFSVYAP-GFFARFLESH 526
            .||     |.||.|:       ||||::           |.:|..|....|... .|.:||.|..
 Frog   469 LEV-----VGDKASKSYHQSLVWNVEEHRYGRSQEQSEREQELHTSPHIDVGRNLSFMSRFWELQ 528

  Fly   527 AVMLQGNAGLKPKEGEVTSRPWQW-----PINYRGQFFSGSSYRIYLLGNPLIWWS-NLVFLALF 585
            ..||  ....:..|.:.:|.|..|     .|.|  .....|:.:|.|||||:||.| ||.  ||.
 Frog   529 WKML--TMRTESSEHKYSSYPMDWITMDTSIAY--WLHPKSTAQIQLLGNPVIWNSANLG--ALI 587

  Fly   586 VTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAKEIVPKAVPSG 650
            .:..|...:::|||            ::.|                               :|.|
 Frog   588 YSALLIFYLLRQRR------------RIYD-------------------------------IPQG 609

  Fly   651 SPEAPNPAQSLRAAAWLFL-GWMLHYLPFWAMGRVLYFHHYFPALIFNSLLTGVMYNYILRVLPK 714
            |.||      |:....||| ||.::||||:.|.:.|:.:||.|||....||           ||.
 Frog   610 SWEA------LQLTGVLFLGGWAVNYLPFFLMEKTLFLYHYLPALTCQILL-----------LPP 657

  Fly   715 WIHHV---------------ILGLVLSILVY-SFAAFSPLAYGMSGPLANEPNSTMYNLKWLSTW 763
            .:.|:               .|.||....|| ::....||.|| ..||:   .:.:.:|:|...|
 Frog   658 LLEHLHQHLLRSEALQNTFAALLLVWGCSVYLTYRKICPLTYG-DPPLS---PAELRSLRWKDNW 718

  Fly   764 E 764
            :
 Frog   719 D 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 247/781 (32%)
PMT 44..290 CDD:280519 82/247 (33%)
MIR 318..374 CDD:197746 29/63 (46%)
MIR 385..440 CDD:197746 17/55 (31%)
MIR 446..501 CDD:197746 26/61 (43%)
PMT_4TMC 518..763 CDD:292810 71/267 (27%)
pomt1NP_001006756.1 PMT1 19..720 CDD:224839 247/781 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D101190at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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