DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and Pomt2

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:XP_011242390.2 Gene:Pomt2 / 217734 MGIID:2444430 Length:837 Species:Mus musculus


Alignment Length:802 Identity:387/802 - (48%)
Similarity:507/802 - (63%) Gaps:98/802 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 PRRGSVKDVAQNA------PRTAPTSSKEANWN--------WWLLLATVFLVTFATRFYKVTEPD 62
            ||||.....|..|      |:.|....|...|:        ||..||.|.|::|||||:::.:|.
Mouse    86 PRRGRCVPQAARAVSRDVVPQAAARKLKRPAWSSRRFQAAGWWATLAVVTLLSFATRFHRLDQPA 150

  Fly    63 HICWDETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSGYLTGYNGTFPFEKPGDKYNETRYQGMR 127
            ||||||||||||||:|||||||||||||||||||||:|||:||:|||.|:||||:|....|.|||
Mouse   151 HICWDETHFGKMGSYYINRTFFFDVHPPLGKMLIGLAGYLSGYDGTFLFQKPGDRYEHHSYMGMR 215

  Fly   128 YFCTTLGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVWGM 192
            .||..||:.::|..:.||.||::|..||||.||.|.||.|.|||:|||||||||:||:||::..|
Mouse   216 GFCAFLGSWLIPFAYLTVLDLSKSFPAALLTAALLTFDTGCLTLSQYILLDPILMFFIMAAMLSM 280

  Fly   193 VKVSKSTASGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILGDLGQPIL 257
            ||.  ::.:...:...||.||.|||..|:..:.|||||||:::.|||:|.::||.:.|||...::
Mouse   281 VKY--NSCANRPFSAPWWFWLSLTGISLAGALGVKFVGLFIIVQVGLNTISDLWHLFGDLSLSLV 343

  Fly   258 ETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYSSAFQSRLIGNSLYNASMPRDVA 322
            ...|.|..|.:.|||.|::||:..|.:|:.|||:||.||||:|||||:||.||||:|||:|..:|
Mouse   344 TVGKHLTARILCLIVLPLVLYVTIFAVHVMVLNKSGPGDGFFSSAFQARLSGNSLHNASIPEHLA 408

  Fly   323 YGSLVTIKNHKTGGGYLHSHHHLYPKGSGARQQQVTTYTHKDENNKWLIRPHN---KPGPPKGKV 384
            |||::|:||.:...||||||.||||:|.||||||||||.|||.||.|:|:.:|   .|..|...|
Mouse   409 YGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVTTYLHKDYNNLWIIKKYNANTDPLDPSFPV 473

  Fly   385 QILRHGDLVRLTHMATRRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIVGGKVNETVH 449
            :.:||||::||.|..|.||||||...||:|:||.||||||..|.||:||.||:.:|..|....:.
Mouse   474 EFVRHGDIIRLEHKETTRNLHSHYHEAPLTRKHYQVTGYGINGTGDSNDFWRIEVVNRKFGNRIK 538

  Fly   450 TVTSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRD-KNSQWNVEDNEHKLMPSVSFSV 513
            .:.||::.|||:..|.|.||||.|||||:||.||:|.|.::: .||.||:|::.:..:|::|..|
Mouse   539 VLRSRIRLIHLVTGCVLGSSGKILPKWGWEQLEVTCTPYLKETTNSIWNIEEHINPKLPNISLDV 603

  Fly   514 YAPGFFARFLESHAVMLQGNAGLKPKEGEVTSRPWQWPINYRGQFFSGSS---YRIYLLGNPLIW 575
            ..|.|....||||.||::||.|||||:.|.||:||.|||||:|..|||::   :|:||||||::|
Mouse   604 LQPSFPEILLESHMVMIRGNNGLKPKDNEFTSKPWHWPINYQGLRFSGANDTDFRVYLLGNPVVW 668

  Fly   576 WSNLVFLALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAK 640
            |.|||.:.|::......||..||       ..|..|::.....|.                    
Mouse   669 WLNLVSIVLYLLSGSTIAVAMQR-------GIQLPAELQGLTKVL-------------------- 706

  Fly   641 EIVPKAVPSGSPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLLT---- 701
                                ||....|.|||||||.||:.|||:|||||||||::|:|:||    
Mouse   707 --------------------LRGGGQLLLGWMLHYFPFFLMGRILYFHHYFPAMLFSSMLTGSPG 751

  Fly   702 -------------GVMYNYILRV---------LPKWIHHV-ILGLVLSILVYSFAAFSPLAYGMS 743
                         |::::.:||:         |.:.||.| ||.|:|: ..|||..|.||||||.
Mouse   752 AVLIGWYMSLLSIGILWDTLLRLCAWGLAPSPLGRRIHAVGILSLLLT-TAYSFYLFHPLAYGMV 815

  Fly   744 GPLANEPNSTMYNLKWLSTWEF 765
            ||||.||.|.|..|:||.:|:|
Mouse   816 GPLAQEPESPMAGLRWLESWDF 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 374/757 (49%)
PMT 44..290 CDD:280519 137/245 (56%)
MIR 318..374 CDD:197746 36/55 (65%)
MIR 385..440 CDD:197746 32/54 (59%)
MIR 446..501 CDD:197746 27/55 (49%)
PMT_4TMC 518..763 CDD:292810 108/274 (39%)
Pomt2XP_011242390.2 PMT1 134..837 CDD:224839 372/752 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850303
Domainoid 1 1.000 294 1.000 Domainoid score I1501
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5297
Inparanoid 1 1.050 756 1.000 Inparanoid score I557
Isobase 1 0.950 - 0 Normalized mean entropy S1660
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D101190at33208
OrthoFinder 1 1.000 - - FOG0002698
OrthoInspector 1 1.000 - - oto94378
orthoMCL 1 0.900 - - OOG6_101353
Panther 1 1.100 - - LDO PTHR10050
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2235
SonicParanoid 1 1.000 - - X3468
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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