DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tw and POMT1

DIOPT Version :9

Sequence 1:NP_001259102.1 Gene:tw / 31024 FlyBaseID:FBgn0086368 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001340122.2 Gene:POMT1 / 10585 HGNCID:9202 Length:747 Species:Homo sapiens


Alignment Length:793 Identity:234/793 - (29%)
Similarity:372/793 - (46%) Gaps:161/793 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 TRFYKVTEPDHICWDETHFGKMGSWYINRTFFF-DVHPPLGKMLIGLSGYLTGYNGTFPFEKPGD 116
            :|.:::|.|..:.:||.::|:..|:|:.:.||. |..||.|.|::.|.|||.|::|.|.:.:.|.
Human    29 SRLWRLTYPRAVVFDEVYYGQYISFYMKQIFFLDDSGPPFGHMVLALGGYLGGFDGNFLWNRIGA 93

  Fly   117 KY-NETRYQGMRYFCTTLGALIMPMGFDTVYDLTRSHEAALLAAAYLIFDVGLLTLNQYILLDPI 180
            :| :......:|......|||.:||.:..|.:|..||.||:.||..::.:..|:|.::.:||:.:
Human    94 EYSSNVPVWSLRLLPALAGALSVPMAYQIVLELHFSHCAAMGAALLMLIENALITQSRLMLLESV 158

  Fly   181 LLFFMMASVWGMVKVSKSTASGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATEL 245
            |:||.:.:|...:|.. :......:.|.||.||.|||...||.:.:|::|:|..:||....|...
Human   159 LIFFNLLAVLSYLKFF-NCQKHSPFSLSWWFWLTLTGVACSCAVGIKYMGVFTYVLVLGVAAVHA 222

  Fly   246 WLILGD------------------LGQPILE----TVKQLACRAITLIVWPVLLYILFFYIHLSV 288
            |.:|||                  :||..:.    ....|..||:.|:|.||:||:||||:||.:
Human   223 WHLLGDQTLSNVGADVQCCMRPACMGQMQMSQGVCVFCHLLARAVALLVIPVVLYLLFFYVHLIL 287

  Fly   289 LNRSGNGDGFYSSAFQSRLIGN-SLYNASMPRDVAYGSLVTIKN--HKTGGGYLHSHHHLYP--- 347
            :.|||..|...|||||:.|.|. :......|.:||:||.||::|  .|....:||||...||   
Human   288 VFRSGPHDQIMSSAFQASLEGGLARITQGQPLEVAFGSQVTLRNVFGKPVPCWLHSHQDTYPMIY 352

  Fly   348 -KGSG-ARQQQVTTYTHKDENNKWLIRPHNK-----PGPPKGKVQILRHGDLVRLTHMATRRNLH 405
             .|.| :.|||||.|..||.||.|:::...:     ..||:.    :||||:|:|.|..|.|:|:
Human   353 ENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRP----VRHGDMVQLVHGMTTRSLN 413

  Fly   406 SHNEPAPMTKKHLQVTGYGELGLG-DANDVWRVLIVG-GKVNETVHTVTSRLKFIHLLQNCALTS 468
            :|:..||::....:|:.|.:..:. .|.::||:.||. |...:...|:.|.::|:|:..:..|..
Human   414 THDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKTILSEVRFVHVNTSAVLKL 478

  Fly   469 SGKQLPKWGFEQQEVSCNPNVRDKNSQ-------WNVEDNEHKLMPSV-----SFSVYAP----- 516
            ||..||.||:.|.|:     |.:|.|:       ||||  ||:...|.     ...:::|     
Human   479 SGAHLPDWGYRQLEI-----VGEKLSRGYHGSTVWNVE--EHRYGASQEQRERERELHSPAQVDV 536

  Fly   517 ----GFFARFLESHAVMLQGNAGLKPKEGE--VTSRPWQW---PINYRGQFFSGSSYRIYLLGNP 572
                .|.|||.|....||    .|:..:.|  .:|.|.:|   ..|........:|.:|:||||.
Human   537 SRNLSFMARFSELQWRML----ALRSDDSEHKYSSSPLEWVTLDTNIAYWLHPRTSAQIHLLGNI 597

  Fly   573 LIWWSNLVFLALFVTVFLCNAVVQQRRAGFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCT 637
            :||.|..:.||::..:.|. .::::||         |...:|....:                  
Human   598 VIWVSGSLALAIYALLSLW-YLLRRRR---------NVHDLPQDAWL------------------ 634

  Fly   638 PAKEIVPKAVPSGSPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLLTG 702
              :.::..|:.:|                   ||.::||||:.|.:.|:.:||.|||.|..||  
Human   635 --RWVLAGALCAG-------------------GWAVNYLPFFLMEKTLFLYHYLPALTFQILL-- 676

  Fly   703 VMYNYILRVLPKWIHHV--------ILGLVLSILV---YSFA-----AFSPLAYGMSGPLANEPN 751
                     ||..:.|:        :...:.|.||   ||.|     ...||.||......:|  
Human   677 ---------LPVVLQHISDHLCRSQLQRSIFSALVVAWYSSACHVSNTLRPLTYGDKSLSPHE-- 730

  Fly   752 STMYNLKWLSTWE 764
              :..|:|..:|:
Human   731 --LKALRWKDSWD 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twNP_001259102.1 PMT1 41..765 CDD:224839 234/793 (30%)
PMT 44..290 CDD:280519 84/260 (32%)
MIR 318..374 CDD:197746 28/62 (45%)
MIR 385..440 CDD:197746 18/55 (33%)
MIR 446..501 CDD:197746 20/61 (33%)
PMT_4TMC 518..763 CDD:292810 63/265 (24%)
POMT1NP_001340122.2 PMT1 14..742 CDD:224839 234/793 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1928
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D101190at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.820

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