DRSC/TRiP Functional Genomics Resources

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Protein Alignment fz3 and smo

DIOPT Version :10

Sequence 1:NP_001096859.1 Gene:fz3 / 31023 FlyBaseID:FBgn0027343 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_523443.1 Gene:smo / 33196 FlyBaseID:FBgn0003444 Length:1036 Species:Drosophila melanogaster


Alignment Length:484 Identity:101/484 - (20%)
Similarity:173/484 - (35%) Gaps:120/484 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 PLCTPDV-PRPVAACKLLCETVRGECMENAPPELM--------------ELWPSFLNCDGLPQPE 213
            |.|...: |...|..|..||.:.||.|...|...|              ..:|.||.|:....|.
  Fly   137 PKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNTTFFPKFLRCNETLFPT 201

  Fly   214 KHELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAGVLCPQNFSGSPFN 278
            |   |                  |.|:.|::            .:.|......|.|.:.|.| :.
  Fly   202 K---C------------------TNGARGMK------------FNGTGQCLSPLVPTDTSAS-YY 232

  Fly   279 P--EECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLTLFALVTF---WAEPTRFGYPERPVLF 338
            |  |.|..:| :|..:|..:.:....||....::|.:..||.:.||   |....:  ||...|.:
  Fly   233 PGIEGCGVRC-KDPLYTDDEHRQIHKLIGWAGSICLLSNLFVVSTFFIDWKNANK--YPAVIVFY 294

  Fly   339 LCLCYNLFSVCYL--------ERIVFHNQARMHDVELQWRLMRPGCLLTPPCLASYITTSYLSLC 395
            :.||:.:..|.:|        |.||......:...|       |.......|:..::...|. |.
  Fly   295 INLCFLIACVGWLLQFTSGSREDIVCRKDGTLRHSE-------PTAGENLSCIVIFVLVYYF-LT 351

  Fly   396 AASWWLIFALCFYLSSHKKWSS-----EALEKRSGLFHVLAWVPPLAPPIAALLLEKVRPSELTG 455
            |...|.:|     |:....|.:     :.::|:...||::||..||...|..:...:|..:.:.|
  Fly   352 AGMVWFVF-----LTYAWHWRAMGHVQDRIDKKGSYFHLVAWSLPLVLTITTMAFSEVDGNSIVG 411

  Fly   456 MCYA--------PGFVELPALVLLLLGLYFTLRASRSLLSLQ---QQLQPTLAHHRFGQIRKRF- 508
            :|:.        .|.:..|...::|:|.||..|....|..|:   ..::.|.|.::...|..|. 
  Fly   412 ICFVGYINHSMRAGLLLGPLCGVILIGGYFITRGMVMLFGLKHFANDIKSTSASNKIHLIIMRMG 476

  Fly   509 --VLFSLLYFAPTTAGVVAALCE----RYADS---------VPSCSTPDDCLSPTPLSAWPALVR 558
              .|.:|::.      :||..|.    |:||.         :...|:..:..|...:...|::..
  Fly   477 VCALLTLVFI------LVAIACHVTEFRHADEWAQSFRQFIICKISSVFEEKSSCRIENRPSVGV 535

  Fly   559 IFFQLV----GGTLTGLWVWSRKTCESYR 583
            :...|:    .|.:...|.|:..:.|:::
  Fly   536 LQLHLLCLFSSGIVMSTWCWTPSSIETWK 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fz3NP_001096859.1 RRM_1 22..83 CDD:425453
CRD_FZ <138..224 CDD:470581 19/74 (26%)
7tmF_FZD3_insect 290..587 CDD:320159 69/341 (20%)
TM helix 1 299..324 CDD:320159 7/27 (26%)
TM helix 2 333..354 CDD:320159 6/28 (21%)
TM helix 3 383..409 CDD:320159 5/25 (20%)
TM helix 4 426..442 CDD:320159 7/15 (47%)
TM helix 5 469..493 CDD:320159 7/26 (27%)
TM helix 6 513..540 CDD:320159 7/39 (18%)
TM helix 7 548..573 CDD:320159 3/28 (11%)
smoNP_523443.1 CRD_SMO 86..221 CDD:143560 23/116 (20%)
7tmF_SMO_homolog 245..568 CDD:320158 69/341 (20%)
TM helix 1 254..279 CDD:320158 7/24 (29%)
TM helix 2 289..310 CDD:320158 5/20 (25%)
TM helix 3 340..366 CDD:320158 6/31 (19%)
TM helix 4 382..398 CDD:320158 7/15 (47%)
TM helix 5 420..449 CDD:320158 7/28 (25%)
TM helix 6 471..498 CDD:320158 7/32 (22%)
TM helix 7 529..554 CDD:320158 3/24 (13%)
Blue background indicates that the domain is not in the aligned region.

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