DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fz3 and mig-1

DIOPT Version :9

Sequence 1:NP_001096859.1 Gene:fz3 / 31023 FlyBaseID:FBgn0027343 Length:646 Species:Drosophila melanogaster
Sequence 2:NP_001021744.1 Gene:mig-1 / 171677 WormBaseID:WBGene00003238 Length:529 Species:Caenorhabditis elegans


Alignment Length:505 Identity:114/505 - (22%)
Similarity:196/505 - (38%) Gaps:110/505 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 DDDDYKSDDEKGQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKLLCETVRGECME 190
            |::.:|  |....|....||:...||.:.:|.|||..||:|...:..|:..|:.||.:|:.:|: 
 Worm    49 DEESWK--DASESILTYKPLLSVVCSEQLKFFLCSVYFPMCNEKLANPIGPCRPLCLSVQEKCL- 110

  Fly   191 NAPPELMEL---WPSFLNCDGLP-QPEKHELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYR 251
               |.|...   ||..:.||..| :..:.::||:             ||...|:  ::|....:.
 Worm   111 ---PVLESFGFKWPDVIRCDKFPLENNREKMCMK-------------GPNEQGA--IQDERAKFA 157

  Fly   252 FWKS---GASPTSDLAGVL------CPQN--FSGSPFNPEECVPQCQRDAFHTSSQKKTSETLIL 305
            ..:|   |.....|:...:      |||:  |..   ...:|||.|........:.::::..|:|
 Worm   158 AKESEDDGNDRVEDIQREVDRLNGKCPQDEVFLN---RSSKCVPLCSNPQKVGQTDRESATRLLL 219

  Fly   306 GLSAVCFVLTLFAL------VTFWAEPTRFGYPERPVLFLCLCYNLFSVCYLERIVFHNQARMHD 364
            .||....:||:.::      :.|..........|..:.|.|:.:...||.|:..|.|.:|.::..
 Worm   220 FLSLSSVILTILSVFIVGLSIYFRRLEMLHSLTETAMFFSCISFCATSVIYIVSISFKDQFQISC 284

  Fly   365 VELQWRLM-RPGCLLTPPCLASYITTSYLSLCAASWWLIFALCFYLSSHKKWSSEALEKRSGLFH 428
            .:....|: ..|.|...||.:......|.:.|:..|||:  :|...:...:.|....:.|:.:..
 Worm   285 TDYTHHLLFVVGGLSHVPCSSVASLIYYTATCSRLWWLL--ICVSWNKATRTSHILDDSRTRVIM 347

  Fly   429 VLAWVPPLAPPIAALLLEKVRPSELTGMCY----AP----------------------------- 460
            ::..: ||||.:.|||.:.|..:.|||:|:    :|                             
 Worm   348 LILGI-PLAPLMLALLAKAVAANPLTGLCFIGAASPGTDWIFNFCRELILFLISSIALSSACCRL 411

  Fly   461 ---------GFVELPALVLLLLGLYFTLR----ASRSLLSLQQQLQPTLAHHRFGQIRKRFVL-- 510
                     ||..:.|.|..:.||::.|.    |::..|||.:......|......:...|::  
 Worm   412 LGSDEQDVNGFAGVIAAVYPIAGLFYMLSFVNDATQPFLSLDRSFNAVSATKFSFDLLLSFIMCA 476

  Fly   511 FSLLY--FAPTTAGVVAALCERYADSVPSCSTPDDCLSPTPLSAWPALVR 558
            |.|:|  |..|.:....:. |.|..:||....|          |.|..||
 Worm   477 FCLIYLLFKLTRSSSKVSK-EGYQPAVPKLPQP----------AIPGSVR 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fz3NP_001096859.1 RRM <19..>122 CDD:223796
RRM_1 22..83 CDD:278504
CRD_FZ <138..224 CDD:295308 27/89 (30%)
Frizzled 291..584 CDD:279827 69/325 (21%)
mig-1NP_001021744.1 CRD_FZ 23..148 CDD:295308 32/117 (27%)
7tm_4 257..>328 CDD:304433 19/72 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D167933at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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