DRSC/TRiP Functional Genomics Resources

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Protein Alignment fz3 and smo

DIOPT Version :10

Sequence 1:NP_001096859.1 Gene:fz3 / 31023 FlyBaseID:FBgn0027343 Length:646 Species:Drosophila melanogaster
Sequence 2:XP_002931911.2 Gene:smo / 100491644 XenbaseID:XB-GENE-487420 Length:815 Species:Xenopus tropicalis


Alignment Length:627 Identity:134/627 - (21%)
Similarity:208/627 - (33%) Gaps:179/627 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 LKANCCV-----YAPPKKKRMIAWSDADDVSIVERNEDEDDDDYKSDDEKGQIAKLVPLIESG-- 149
            ||.|.|:     ||      :.:...|:|.|..|...|                ||  |:.||  
 Frog    46 LKYNVCLGSVLPYA------LTSTVLAEDSSTQEEIHD----------------KL--LLWSGLR 86

  Fly   150 ----CSRRARFLLCSSLFPLC---TPDVPRPVAACKLLCETVRGEC----MENAPPELMELWPSF 203
                |....|.|||:...|.|   ..::|     .:.||:|.|..|    .|..       ||.|
 Frog    87 NAPRCWDAIRPLLCAVYMPKCEGGKVELP-----SQSLCQTTRVPCAIVARERG-------WPDF 139

  Fly   204 LNC--DGLPQPEKHELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAGV 266
            |.|  |..|.                              |..:..||.:|..||...    |.:
 Frog   140 LKCTTDHFPD------------------------------GCSNEIQTVKFNSSGQCE----APL 170

  Fly   267 LCPQNFSGSPFNPEECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLTLFALVTF---WAEPTR 328
            :...|......:.|.|..|||...| |..:.:.....|...|:|....|.|.|.||   |....|
 Frog   171 VRTDNPKSWYEDVEGCGIQCQNPLF-TKKEHREMHVYIAIFSSVTIFCTFFTLATFLSDWKNSNR 234

  Fly   329 FGYPERPVLFLCLCYNLFSVCYL--------ERIVFHNQARMHDVELQWRLMRPGCLLTPPCLAS 385
              ||...:.::..|:.:.|:.:|        :.||......|       ||..|....|..|:..
 Frog   235 --YPAVILFYVNACFFVGSIGWLAQFMDGARDEIVCRGDGTM-------RLGEPTSNETLSCVII 290

  Fly   386 YITTSYLSLCAASWWLIFALCFYLS------SHKKWSSEALEKRSGLFHVLAWVPPLAPPIAALL 444
            ::...|..:....|:::....::.|      :|     :.|..::..||::.|..|....:|.|.
 Frog   291 FVIVYYAMMSGVIWFVMLTYAWHTSFKALGTTH-----QPLSGKTSYFHLITWSIPFVLTVAILA 350

  Fly   445 LEKVRPSELTGMC--------YAPGFVELPALVLLLLGLYFTLRASRSLLSLQQQLQPTLAHHRF 501
            :.:|....::|:|        |..|||..|..::|::|.||.:|...:|.|::......|:....
 Frog   351 VAQVDGDSVSGICFVGYKNYHYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAA 415

  Fly   502 GQIRK---RFVLFSLLYFAPTTAGVVA-----------------------ALCERYADSVPSCST 540
            .:|.:   |..:|..|.|     |.|.                       .|||.........:.
 Frog   416 SKINETMLRLGIFGFLAF-----GFVLITFGCHFYDFFNQAEWERSFREYVLCEANVTIAEQTNK 475

  Fly   541 P-DDCLSPTPLSAWPALVRIFFQLVGGTLTGLWVWSRKTCESYRNR----LGASGTPTSSLMNQS 600
            | .:|......|.....:.:|.....|.....|||::.|...::..    ||.|......:....
 Frog   476 PIPECEIKNRPSLLVEKINLFAMFGTGISMSTWVWTKATIIIWKRAWCRILGRSDDEPKRIKKSK 540

  Fly   601 KAAGAL---------PKKHLYTSGKSMLPTGGITPLYAGISF 633
            ..|.|.         |:|.|..|..::...|.:    ||::|
 Frog   541 MIAKAFSKRKELLNNPEKELSFSLHTVSHEGPV----AGLNF 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fz3NP_001096859.1 RRM_1 22..83 CDD:425453
CRD_FZ <138..224 CDD:470581 26/100 (26%)
7tmF_FZD3_insect 290..587 CDD:320159 71/352 (20%)
TM helix 1 299..324 CDD:320159 8/27 (30%)
TM helix 2 333..354 CDD:320159 3/28 (11%)
TM helix 3 383..409 CDD:320159 2/25 (8%)
TM helix 4 426..442 CDD:320159 4/15 (27%)
TM helix 5 469..493 CDD:320159 7/23 (30%)
TM helix 6 513..540 CDD:320159 7/49 (14%)
TM helix 7 548..573 CDD:320159 3/24 (13%)
smoXP_002931911.2 CRD_SMO 39..169 CDD:143560 43/192 (22%)
7tmF_SMO_homolog 193..523 CDD:320158 71/349 (20%)
TM helix 1 202..227 CDD:320158 8/24 (33%)
TM helix 2 237..258 CDD:320158 3/20 (15%)
TM helix 3 288..314 CDD:320158 2/25 (8%)
TM helix 4 332..348 CDD:320158 4/15 (27%)
TM helix 5 370..399 CDD:320158 10/28 (36%)
TM helix 6 421..448 CDD:320158 6/31 (19%)
TM helix 7 484..509 CDD:320158 3/24 (13%)
Blue background indicates that the domain is not in the aligned region.

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