DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5254 and Shawn

DIOPT Version :10

Sequence 1:NP_569856.2 Gene:CG5254 / 31020 FlyBaseID:FBgn0040383 Length:306 Species:Drosophila melanogaster
Sequence 2:NP_001027071.1 Gene:Shawn / 3772641 FlyBaseID:FBgn0031039 Length:387 Species:Drosophila melanogaster


Alignment Length:339 Identity:91/339 - (26%)
Similarity:148/339 - (43%) Gaps:63/339 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QVLAGGSAGFLEVCIMQPLDVVKTRIQIQA-------------------------TPAPNAAALG 56
            ||.:..:...:..|.|.||||:|||:|.|.                         ||.| |||..
  Fly    42 QVASACTGAMVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNP-AAAKP 105

  Fly    57 EVHYNGVFDCFAKMYRHEGISSYWKGIMPPILAETPKRAIKFLVFEQTKPLF------------Q 109
            ...::|..|.|.|:.|.|||.|.|.|:.|.:::..|...|.|:.:||.|..|            .
  Fly   106 APRFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAYEQFKARFTDIHYKYTRRPDT 170

  Fly   110 FGSPTPTPLTF---SLAGLTAGTLEAIAVNPFEVVKVAQQADRQKKMLSTFAVAKGIIQQDGLGF 171
            .....|.|:.|   .|||::...|....|:|.|:::...|:.|... ...|...:.::|..|:  
  Fly   171 IAHDIPHPIPFLVPLLAGVSGRILAVTCVSPVELIRTKMQSQRMTH-AEMFGTIRQVVQSQGV-- 232

  Fly   172 SGLNKGITATMGRNGVFNMVYFGFYHSVKN----VVPEYKESHLEFLRKVTIGFLAGTLACFVNI 232
            .||.:|:..|:.|:..|:.:|:..|..:|:    |.|.:..|       ...|.::|::|..:..
  Fly   233 LGLWRGLPPTILRDVPFSGIYWTCYEYLKSSFGVVEPTFSFS-------FAAGAISGSVAATITT 290

  Fly   233 PFDVAKSRIQ---GPQPV-----PGQIKYRGTLSSMGIVYREEGFRALYKGLVPKIMRLGPGGAI 289
            ||||.|:..|   |.:.:     |.|:..:.....:..:||..|..|::.||.|::.::.|..||
  Fly   291 PFDVVKTHEQIEFGEKFIFSDNPPKQVATKSVAMRLASIYRMGGVPAIFSGLGPRLFKVAPACAI 355

  Fly   290 LLLVFEYSYDYLLH 303
            ::..|||...:..|
  Fly   356 MISSFEYGKSFFYH 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5254NP_569856.2 Mito_carr 18..112 CDD:395101 37/130 (28%)
Mito_carr 122..207 CDD:395101 23/88 (26%)
Mito_carr 209..305 CDD:395101 27/103 (26%)
ShawnNP_001027071.1 Mito_carr 39..159 CDD:395101 38/117 (32%)
Mito_carr 178..265 CDD:395101 23/89 (26%)
Mito_carr 268..371 CDD:395101 28/109 (26%)

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