DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and OSMR

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001310435.1 Gene:OSMR / 9180 HGNCID:8507 Length:980 Species:Homo sapiens


Alignment Length:997 Identity:185/997 - (18%)
Similarity:302/997 - (30%) Gaps:383/997 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  1243 YNISYKQLVKTPGTIKYVPRSVVIEDHTANSHVLDSLEEWTLYEVK-MNACNDVGCSKESDTAVE 1306
            :|::....::..||..|...|        ..:|.:.::...|:..| :....|..|..|....:.
Human   198 FNLNSVPFIRNKGTNIYCEAS--------QGNVSEGMKGIVLFVSKVLEEPKDFSCETEDFKTLH 254

  Fly  1307 RTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNA 1371
            .|      :.|         .|...:.|.:.|.|       .|.:|.:.:...:...||   |..
Human   255 CT------WDP---------GTDTALGWSKQPSQ-------SYTLFESFSGEKKLCTHK---NWC 294

  Fly  1372 TFTTTLTELKKYVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGV----PSNVSFPDVSLTMAR 1432
            .:..|....:.|        .:|.:....|....:.: .|..|..|    |.:|:|.:|:.|.|.
Human   295 NWQITQDSQETY--------NFTLIAENYLRKRSVNI-LFNLTHRVYLMNPFSVNFENVNATNAI 350

  Fly  1433 IIW-------------DVPVDPNGKIL-AYQVTYTLNGSAMLNYSREFPPSDRTFRATELLPGKY 1483
            :.|             .:.:...||:: .|.|:..:||...|:   |..|      |||.:    
Human   351 MTWKVHSIRNNFTYLCQIELHGEGKMMQQYNVSIKVNGEYFLS---ELEP------ATEYM---- 402

  Fly  1484 YSFSCTAQTRLG-------WGKIATALVYTTNNRERPQAPSVPQISRSQIQAHQITFSWTPGRDG 1541
                  |:.|..       |.: .:...:||......:||.|.:|...:...|.:|..|.|    
Human   403 ------ARVRCADASHFWKWSE-WSGQNFTTLEAAPSEAPDVWRIVSLEPGNHTVTLFWKP---- 456

  Fly  1542 FAPLRYYTVEMRENEGRWQPLPERVDPSLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIV 1606
                                        ||...|.|                             
Human   457 ----------------------------LSKLHANG----------------------------- 464

  Fly  1607 RTLPAAPAVGVGGLKVVPITTTSVRVQWSALETALWNGDASTGGYRILYQQLSDFPTALQSTPKT 1671
                          |::                          .|.::.:.| |.|::      :
Human   465 --------------KIL--------------------------FYNVVVENL-DKPSS------S 482

  Fly  1672 DVHGI----NENSVVLSDLQQDR-NYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGEPRAVDAAP 1731
            ::|.|    |...::|     || :|:|.|:..||.|    ..||:|.|..|.|  |.:.|:...
Human   483 ELHSIPAPANSTKLIL-----DRCSYQICVIANNSVG----ASPASVIVISADP--ENKEVEEER 536

  Fly  1732 ISSTE--VRLLWKPPKQSMQNGDILGYKIYYL---------------------VTYSPQALEPGR 1773
            |:.||  ..|.|||     |.||::||.:.:.                     ...|..|..||.
Human   537 IAGTEGGFSLSWKP-----QPGDVIGYVVDWCDHTQDVLGDFQWKNVGPNTTSTVISTDAFRPGV 596

  Fly  1774 KWEEEIEVVSATATSHSLVFLDKFTEYRIQLLAFNPAGDGPRSAPITVKTLPGVPSAPLHLRFSD 1838
            :::..|..:|   |......|:|.|.|..:|                      .||...|:....
Human   597 RYDFRIYGLS---TKRIACLLEKKTGYSQEL----------------------APSDNPHVLVDT 636

  Fly  1839 ITMQSLEVTW------DPPKFLNGEILGYLVTYETTEENEKFSKQV--------KQKVSN---TT 1886
            :|..|..::|      ..|.|:.|..: ||.: :..:.:.:|.|.|        |.|:.|   ..
Human   637 LTSHSFTLSWKDYSTESQPGFIQGYHV-YLKS-KARQCHPRFEKAVLSDGSECCKYKIDNPEEKA 699

  Fly  1887 LRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGPQDGSPVAPRDL-------ILTKTLSSVEM 1944
            |.|.||:.|..|.|.:...||...||..:....|.|.:.|.:....|       :|...:..::.
Human   700 LIVDNLKPESFYEFFITPFTSAGEGPSATFTKVTTPDEHSSMLIHILLPMVFCVLLIMVMCYLKS 764

  Fly  1945 HWING---PSGRGP----ILGYL--------------------IEAKKRDDSRWTKIE--QTRKG 1980
            .||..   |....|    ||..:                    ||...:.:.  |||:  .|||.
Human   765 QWIKETCYPDIPDPYKSSILSLIKFKENPHLIIMNVSDCIPDAIEVVSKPEG--TKIQFLGTRKS 827

  Fly  1981 MMQ-DFTVSYHILM---------PSTAYTFRVIAYNRYGISFPVYSKDSILTPSKLHLEYGYLQH 2035
            :.: :.|...::.:         |.....|..:.||:       .:.||           |...|
Human   828 LTETELTKPNYLYLLPTEKNHSGPGPCICFENLTYNQ-------AASDS-----------GSCGH 874

  Fly  2036 KPFYRQTWFMVSLAATSIVIIVMVIAVLCVKSKSYKYKQEAQKTLEESMAMSIDERQELALELYR 2100
            .|...:...|:.|..:                     .:...|.||::...|:.|..        
Human   875 VPVSPKAPSMLGLMTS---------------------PENVLKALEKNYMNSLGEIP-------- 910

  Fly  2101 SRHGVGTGTLNSVGTLRSGTLG 2122
                .|..:||.|..|.|...|
Human   911 ----AGETSLNYVSQLASPMFG 928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653
Ig 378..447 CDD:143165
Ig 506..587 CDD:299845
IG_like 506..587 CDD:214653
I-set 592..682 CDD:254352
Ig 595..682 CDD:299845
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020 11/65 (17%)
fn3 1317..1402 CDD:278470 13/84 (15%)
FN3 1415..1507 CDD:238020 23/116 (20%)
FN3 1513..1608 CDD:238020 12/94 (13%)
fn3 1617..1708 CDD:278470 17/95 (18%)
FN3 1722..1823 CDD:238020 26/123 (21%)
FN3 1828..1920 CDD:238020 28/108 (26%)
FN3 1927..2016 CDD:238020 21/134 (16%)
OSMRNP_001310435.1 FN3 233..>288 CDD:304408 12/76 (16%)
FN3 335..407 CDD:214495 20/90 (22%)
WSXWS motif 416..420 1/4 (25%)
FN3 446..522 CDD:238020 28/192 (15%)
fn3 540..608 CDD:278470 17/75 (23%)
FN3 626..734 CDD:238020 28/109 (26%)
Box 1 motif 771..779 1/7 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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