Sequence 1: | NP_001284756.1 | Gene: | sdk / 31017 | FlyBaseID: | FBgn0021764 | Length: | 2265 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_996816.3 | Gene: | USH2A / 7399 | HGNCID: | 12601 | Length: | 5202 | Species: | Homo sapiens |
Alignment Length: | 2616 | Identity: | 551/2616 - (21%) |
---|---|---|---|
Similarity: | 906/2616 - (34%) | Gaps: | 736/2616 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 14 PKTTITATLAIEMPSQPKLASLLAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHP 78
Fly 79 SSSGSIVSEGSTKIL---QCHALGYPQP-TYRWL--------------------KDGVPVG---- 115
Fly 116 -------------------------DFSSSQFYRFHSTRREDAGSYQCIARN-DAGSIFSEKSDV 154
Fly 155 VVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVM--WQSEDGP----LNYDIK----YA 209
Fly 210 FTHANQLIILSADE--------------------------------NDRKGYRAKAINTQLGKEE 242
Fly 243 SSAFVHLNVSG----------DP--------YIEVAPEIIVRPQDVKVKVGTGVVELQC------ 283
Fly 284 -----IANARPLHELETLWLKDGLAVETAGVRHTLND----------PWNRTLALLQAN------ 327
Fly 328 ------SSHSGE-------------------------------------YTCQVRLRSGGYPAVS 349
Fly 350 ASARLQILEPPLFFTPMRAETFGEFGGQVQLT-----CDVV-GEPTPQVKWFRNAESVDAHIESG 408
Fly 409 RYTLNTD--NTLVIKKLILDDAAMFQ--CLAINEAGENSASTWLRVKTK---------TAKNRVK 460
Fly 461 RLAQPRILRVRAS-------------HAGLGSEKGSESGSSDRR-----KEFRFASAPIMELPPQ 507
Fly 508 NVTALDGKDATISCRAVGSPN----PNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAGL- 567
Fly 568 YICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQS 632
Fly 633 STP---ISNSQRI-----------GVQADGQLEIQA-----------------VRASDVGSYACV 666
Fly 667 VTSPGGNETRAARLSVIELP-------FPPSNVKVERLPEPQQRSINVSW-TPGFDGNSPISKFI 723
Fly 724 IQRREVSELGPVPDPLLN--WITELSNVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPS 786
Fly 787 NV-VELPQEAP---SGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNN---- 843
Fly 844 VPWSYQNITNEAQRNFLIQ--ELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVK 906
Fly 907 VEAINSTAAR---CRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAE 968
Fly 969 QTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSD-RSVKVLWAP 1032
Fly 1033 PRASNGILTGYTVRYQVKDRPDTLKSFNLTAD--------DTELTVNQLQATTHYWFEIVAWTRV 1089
Fly 1090 GSGIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKV-----EGQTAR 1149
Fly 1150 NMT-------WFTICEIN-DPDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSEATKDFQTIQAR 1206
Fly 1207 PK--HPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVK----TPGTIKYVPRSVV 1265
Fly 1266 IEDHTANSHVLDSLEEWTLYEVKMNACNDVGCSKESDTAVERTREAVPS-YGPLDVQANATSSTT 1329
Fly 1330 VVVQWGEVPRQHRNGQIDGYKVFY----AAADRGQQVLHKTIPNNATFTTTLTELKKYVVYHVQV 1390
Fly 1391 LAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLT---MARIIWDVPVDPNGKILAYQ--- 1449
Fly 1450 ---VTYTLNGSAMLNYSREFPPSDRTFRATELLPGKYYSFSCTAQTRLGWGKIATALVYTTNNRE 1511
Fly 1512 RPQAPSVPQISRSQIQAHQ-ITFSWTPGRDGFAPLR------YYTVEMRENEGRWQPLPERVDP- 1568
Fly 1569 ----------SLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIVRTLPAAP---------- 1613
Fly 1614 AVGVGGLKVVPITTTSVRVQWSALETALWNGDASTGGYRILYQQLSDFPTALQ---STPKTDVHG 1675
Fly 1676 INENSVVLSDLQQDRNYEIVVLPFNSQGPGPA------TPPAAVYVGEAVPTGEPRAVDAAPISS 1734
Fly 1735 TEVRLLWKPPKQSMQNGDILGYKIYYLVTYSPQALEPGRKWEEEIEVVSATATSHSLVFLDKFTE 1799
Fly 1800 YRIQLLA---FNPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGY 1861
Fly 1862 LVTYE-----------TTEENEKFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGIS 1915
Fly 1916 ENVTTGPQDGSPVAPRDLILTKTLSSVEMHWINGPSGRGPILGYLIEAKKRDDSR--WTKIEQTR 1978
Fly 1979 KGMMQDFTVSYHILMPSTA---YTFRVIAYNRYG-ISFPVYSKDS-------ILTPSKLHLEYGY 2032
Fly 2033 LQHKPFYRQTWFMVSLAATSIVIIVMVIAVLCVKSKSYK--YKQEAQKTLEESMAMSIDERQELA 2095
Fly 2096 LELYRSRHGVGTGTLNSVGTLRSGTLGTLGRKSTSRPPPGV-HLG----KSPPRPSPASVAYHSD 2155
Fly 2156 EESLKCYDENPDDSSVTEKPSEVSSSEASQHSESENESVRSDP---HSFVNH----YANVNDSLR 2213
Fly 2214 QSWKKTKPVRNYSSYT 2229 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
sdk | NP_001284756.1 | Ig | 71..157 | CDD:299845 | 25/139 (18%) |
I-set | 72..150 | CDD:254352 | 24/131 (18%) | ||
Ig | 172..245 | CDD:299845 | 19/114 (17%) | ||
IG_like | 280..356 | CDD:214653 | 19/145 (13%) | ||
Ig | 280..343 | CDD:299845 | 18/132 (14%) | ||
IG_like | 375..450 | CDD:214653 | 16/84 (19%) | ||
Ig | 378..447 | CDD:143165 | 15/78 (19%) | ||
Ig | 506..587 | CDD:299845 | 16/85 (19%) | ||
IG_like | 506..587 | CDD:214653 | 16/85 (19%) | ||
I-set | 592..682 | CDD:254352 | 22/120 (18%) | ||
Ig | 595..682 | CDD:299845 | 22/117 (19%) | ||
FN3 | 686..789 | CDD:238020 | 29/113 (26%) | ||
FN3 | 798..893 | CDD:238020 | 26/100 (26%) | ||
FN3 | 901..1005 | CDD:238020 | 29/106 (27%) | ||
fn3 | 1011..1094 | CDD:278470 | 15/91 (16%) | ||
FN3 | 1108..1202 | CDD:238020 | 24/106 (23%) | ||
FN3 | 1210..1308 | CDD:238020 | 22/101 (22%) | ||
fn3 | 1317..1402 | CDD:278470 | 23/88 (26%) | ||
FN3 | 1415..1507 | CDD:238020 | 26/100 (26%) | ||
FN3 | 1513..1608 | CDD:238020 | 29/112 (26%) | ||
fn3 | 1617..1708 | CDD:278470 | 26/99 (26%) | ||
FN3 | 1722..1823 | CDD:238020 | 23/103 (22%) | ||
FN3 | 1828..1920 | CDD:238020 | 24/102 (24%) | ||
FN3 | 1927..2016 | CDD:238020 | 20/94 (21%) | ||
USH2A | NP_996816.3 | LamGL | 146..283 | CDD:214722 | |
Laminin_N | 291..516 | CDD:413488 | |||
EGF_Lam | 517..565 | CDD:238012 | |||
EGF_Lam | 574..639 | CDD:238012 | |||
Laminin_EGF | 641..691 | CDD:395007 | |||
EGF_Lam | 694..733 | CDD:214543 | |||
Laminin_EGF | 747..795 | CDD:395007 | |||
EGF_Lam | 794..844 | CDD:238012 | |||
EGF_Lam | 847..897 | CDD:214543 | |||
EGF_Lam | 900..948 | CDD:238012 | |||
EGF_Lam | 950..1000 | CDD:238012 | |||
EGF_Lam | 1001..>1037 | CDD:238012 | |||
fn3 | 1058..1132 | CDD:394996 | |||
fn3 | 1150..1227 | CDD:394996 | |||
FN3 | 1242..1357 | CDD:238020 | |||
FN3 | 1368..1451 | CDD:214495 | |||
LamG | 1519..1678 | CDD:238058 | |||
LamG | 1716..1868 | CDD:238058 | |||
FN3 | 1956..2051 | CDD:238020 | |||
FN3 | 2241..2313 | CDD:238020 | |||
FN3 | 2329..2428 | CDD:238020 | |||
FN3 | 2432..2528 | CDD:238020 | |||
FN3 | 2533..2619 | CDD:238020 | |||
FN3 | 2621..2719 | CDD:238020 | |||
FN3 | 2724..2799 | CDD:238020 | |||
FN3 | 2818..2920 | CDD:238020 | 2/7 (29%) | ||
FN3 | 2925..3015 | CDD:238020 | 20/104 (19%) | ||
FN3 | 3026..>3087 | CDD:238020 | 7/62 (11%) | ||
FN3 | <3449..3494 | CDD:238020 | 10/45 (22%) | ||
FN3 | 3503..3586 | CDD:238020 | 10/88 (11%) | ||
FN3 | 3590..3676 | CDD:238020 | 21/100 (21%) | ||
FN3 | 3680..3767 | CDD:238020 | 15/88 (17%) | ||
fn3 | 3777..3856 | CDD:394996 | 27/100 (27%) | ||
FN3 | 3866..3960 | CDD:238020 | 28/106 (26%) | ||
FN3 | 3964..4057 | CDD:238020 | 29/102 (28%) | ||
fn3 | 4161..4247 | CDD:394996 | 21/87 (24%) | ||
FN3 | 4268..4351 | CDD:238020 | 22/101 (22%) | ||
fn3 | 4357..4428 | CDD:394996 | 23/89 (26%) | ||
FN3 | 4444..4516 | CDD:238020 | 22/87 (25%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 4518..4541 | 8/25 (32%) | |||
FN3 | 4529..4627 | CDD:238020 | 29/112 (26%) | ||
FN3 | 4636..4730 | CDD:238020 | 26/109 (24%) | ||
FN3 | 4826..4927 | CDD:238020 | 25/107 (23%) | ||
PDZ-binding | 5200..5202 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3510 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |