DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and cntn4

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001073520.1 Gene:cntn4 / 571349 ZFINID:ZDB-GENE-060929-776 Length:1028 Species:Danio rerio


Alignment Length:1132 Identity:285/1132 - (25%)
Similarity:455/1132 - (40%) Gaps:210/1132 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LQAPRFTTHPSSSGSIVS-----EGSTKIL-QCHALGYPQPTYRWLKDGVPVG-------DFSSS 120
            ||...|:..|   |||||     |.|.::: .|.|.|.|.|.|||..:|..|.       ..:..
Zfish    22 LQNLVFSKQP---GSIVSPVDSMEKSREVVFSCEAQGDPPPFYRWKLNGSVVNPKPGSHHSLTGG 83

  Fly   121 QFYRFHSTRREDAGSYQCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDM-PP 184
            .....|..:..|||:|||:|.|..|:|.|.::.:..||:..|:......::|..|...:... ||
Zfish    84 NLRINHLNKDMDAGTYQCLASNSFGTIVSREASLTFAYLENFKTHKRSSVSVREGQGVVLLCGPP 148

  Fly   185 IESIPV---------PSVMWQSEDGPLNYDIKYAFTHANQLIILSADENDRKGYRAKAINTQLGK 240
            ..|..:         ||::.|...       ::.......|.|...:.:|...|.....||....
Zfish   149 PHSGALTFSWIFNEYPSIVKQDSR-------RFVSQETGNLYIAKVEPSDVGNYTCVVTNTVTKT 206

  Fly   241 EESSAFVHLNVSGDPYI-EVAPEIIVR-PQDVKVKVGTGVVELQCIANARPLHELETLWLK-DGL 302
            :.......|.:..|..: |..|:|.|: |:.|:|..|: .|.|:|.|...|:..:.  |.: ||:
Zfish   207 QVQGPPTPLILRTDGVMGEYEPKIEVQFPEVVQVAKGS-TVRLECFALGNPVPSIS--WRRVDGV 268

  Fly   303 A-VETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQVRLRSGGYPAV----SASARLQILEPPLF 362
            . .....||.|     :..:.:.......:|.|.| |...|.|..:|    |..|..|::|.|  
Zfish   269 PFARKVDVRKT-----SGVMEIPYFQQEDAGTYEC-VAENSKGRNSVQGKLSFFASPQLIEKP-- 325

  Fly   363 FTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDD 427
                 .:........:...|...|:|.|..:|.:|.|:::. .|.....:|  ..|.|..|.|.|
Zfish   326 -----QDVQKPIDDSLVWECKATGKPKPSYRWMKNGENLEP-TEERVQVIN--GALSITHLALSD 382

  Fly   428 AAMFQCLAINEAGENSASTWLR---VKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSD 489
            ..|:||:|.|:.||..::..||   |....::|::|            ||               
Zfish   383 IGMYQCVAGNKYGEVYSNAELRVIAVAPDFSQNQLK------------SH--------------- 420

  Fly   490 RRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGD 554
                               ....:|.|..|.|:...||..:|:|......|.: |||:.:||||.
Zfish   421 -------------------TLVKEGGDVLIECKPKMSPRGSISWRKGNDALRE-SSRIAVLESGS 465

  Fly   555 LLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPS 619
            |.|||:...|||.|.||..|:.|.......|.|...|.|...|....|.:|.:..|.|:||.|||
Zfish   466 LRISNVSKSDAGSYTCVARNQFGEASSLGNLLVKEPTIITTAPNTLDVTVGESIILPCQVSYDPS 530

  Fly   620 VPYNIDWYREGQSSTPISNSQRI-------------GVQADGQLEIQAVRASDVGSYACVVTSPG 671
            :.....|:         .|.|.|             |..:.|.:.|:.::....|.|.|.|.:..
Zfish   531 LELKFTWF---------FNEQLIHFGSHGGYFEKVGGQHSAGDIMIRNIQLRHAGKYTCAVQTKV 586

  Fly   672 GNETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELG--- 733
            .:.:.|..|.|...|.||:::.||.:.:   .:..:||.||.|.:|||:.:.||.|....||   
Zfish   587 DSSSIATDLIVRGPPGPPTSIHVEEITD---TTATLSWRPGPDNHSPITAYTIQARTPFSLGWQA 648

  Fly   734 --PVPD-----PLLNWITELSNVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVEL 791
              .||:     .|...:.||:      .|:         .|:|||.|.|.||.|.||:||.....
Zfish   649 VSTVPEVVGGSHLTATVIELN------PWV---------EYEFRVLASNAVGTGEPSKPSKKART 698

  Fly   792 PQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITN-EA 855
            ....|...|....|...|.||::..|:|..||.:||...||::.:|.||  :..|....:.: ||
Zfish   699 KDTVPKVTPANVSGGGGSRSELVITWEPVPEELQNGAGFGYVVAFRPFG--STGWMQAAVPSPEA 761

  Fly   856 QRN-FLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRW 919
            .:. |..:.::.:..:.|::.||||.|.|.:.....|.:.|..|...|:.::.::::::.....|
Zfish   762 SKYVFKNETILPFSPFQVKVGAYNNKGEGPFGPVITIYSAEEEPGRAPSRLRAKSLSASDVEVSW 826

  Fly   920 TPPNPQQINGINQGYKIQAW---QRRLIDGEWRDIERRMKTVPPSLIDPLAEQT-AILGGLEKFT 980
                           |...|   ::|::..|.|..|:..|....|::..:..:| ||:.||:..:
Zfish   827 ---------------KALPWSTSKKRVLGYELRYWEKNEKEDASSVLRTVGNRTLAIIQGLKGSS 876

  Fly   981 EYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLW--APPRASNGILTGY 1043
            .|.|:|..:...|.|..|..|.:.|....|.:.......:.|:..:.:.|  ..|..:...:.||
Zfish   877 TYYITVRAYNTAGTGPPSPVVNITTKKPPPSQPPSKVMWNTSNSKIILNWEQVKPLENESEVMGY 941

  Fly  1044 TVRYQVK--DRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSG-------IPKTATI 1099
            .|.|:..  .||:.::: |.|:.:..|..::     .|..:|..:...|.|       ||:.   
Zfish   942 KVMYRRNRFSRPNVMET-NTTSVELSLPTDE-----EYIIQIKPFGEGGEGSSSRQITIPRI--- 997

  Fly  1100 QSGVEPVLPHA-PTALALSNIEAFSVV 1125
             ||     |:| .:|.::|.:.|.|.:
Zfish   998 -SG-----PNAIGSASSVSTLSALSTI 1018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 31/98 (32%)
I-set 72..150 CDD:254352 30/90 (33%)
Ig 172..245 CDD:299845 14/82 (17%)
IG_like 280..356 CDD:214653 19/81 (23%)
Ig 280..343 CDD:299845 14/64 (22%)
IG_like 375..450 CDD:214653 23/77 (30%)
Ig 378..447 CDD:143165 21/68 (31%)
Ig 506..587 CDD:299845 29/80 (36%)
IG_like 506..587 CDD:214653 29/80 (36%)
I-set 592..682 CDD:254352 24/102 (24%)
Ig 595..682 CDD:299845 23/99 (23%)
FN3 686..789 CDD:238020 37/112 (33%)
FN3 798..893 CDD:238020 28/96 (29%)
FN3 901..1005 CDD:238020 22/107 (21%)
fn3 1011..1094 CDD:278470 16/93 (17%)
FN3 1108..1202 CDD:238020 6/19 (32%)
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
cntn4NP_001073520.1 I-set 26..118 CDD:254352 31/94 (33%)
Ig 26..116 CDD:299845 31/92 (34%)
Ig 121..216 CDD:299845 16/101 (16%)
IG_like 131..207 CDD:214653 14/82 (17%)
Ig 228..316 CDD:299845 26/96 (27%)
I-set 228..309 CDD:254352 24/89 (27%)
I-set 319..405 CDD:254352 25/95 (26%)
Ig 320..405 CDD:299845 25/94 (27%)
I-set 410..498 CDD:254352 33/134 (25%)
Ig 426..498 CDD:299845 29/72 (40%)
I-set 504..597 CDD:254352 24/101 (24%)
Ig 517..601 CDD:299845 21/92 (23%)
FN3 601..693 CDD:238020 35/109 (32%)
FN3 707..799 CDD:238020 27/93 (29%)
FN3 808..901 CDD:238020 22/107 (21%)
FN3 893..994 CDD:238020 20/106 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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