DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and chl1a

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_068072887.1 Gene:chl1a / 566148 ZFINID:ZDB-GENE-090313-201 Length:1310 Species:Danio rerio


Alignment Length:1335 Identity:327/1335 - (24%)
Similarity:537/1335 - (40%) Gaps:287/1335 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVS--EGSTKILQCHAL 98
            |:|.:|..:..:.|..|...:::|..:|..|             :||:|::  .....|.:|.|.
Zfish     7 LSVGLLSAFFSTTFGLYFPPHVEQLPTITAQ-------------TSGTIIALPYDERYIFKCEAK 58

  Fly    99 GYPQPTYRWLKDGVPVGDFSSSQFY------RFHSTRRED----AGSYQCIARNDAGSIFSEKSD 153
            |.|:||:||.|||:........|..      .|....::|    .|.|:|.|.|..|:..||:::
Zfish    59 GNPRPTFRWTKDGMDFDPHKDPQVTTEENTGTFEIPNKKDKVKYQGKYRCYASNKLGTATSEEAE 123

  Fly   154 VVVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVMWQSEDGPLNYDIKYAFTHANQLII 218
            .:|..:..|.......:.|..|...:.:..|.:.||...:.|.:.|                  :
Zfish   124 FIVPMVPKFPKEKIEPIVVTEGDSVVLECNPPQGIPPWQLYWMTND------------------L 170

  Fly   219 LSADENDRKGYRAKAINTQLGKEESSAFVHLNVSG--DPY-----------IEVAPEII--VRPQ 268
            ...::|:|         ..:|...:..|.:..||.  |.|           |...|.::  |:|.
Zfish   171 RHIEQNER---------VSMGLSGNLYFSNTLVSDSHDDYCCFASFFKIRTIVQKPRMVLKVKPV 226

  Fly   269 DVKVKVGTGVV-------------------------ELQCIANARPLHELETLWLKD-GLAVETA 307
            |.|.:.|...:                         ||:|||...|..|:|  |:|. |...:..
Zfish   227 DAKQEDGDAKIVQERKPSILVPSSHSTTFLKKGEELELECIAEGLPTPEVE--WIKIWGDLPKRT 289

  Fly   308 GVRHTLNDPWNRTLALLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLF-FTPMRAETF 371
            .:::     :.:.|.:........|:|.|:.:.:.|   ......::::.|||.: ..|:::: .
Zfish   290 QIKN-----FGKLLTIPNIREEDEGKYMCKAKNQHG---EDVHHFQVEVEEPPSWQKEPLKSQ-L 345

  Fly   372 GEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAI 436
            ...|..:.:.|...|:|.|.:.|.||.:.:|....:....|  |:.::|.|....|.|::||.|.
Zfish   346 AWIGSDIHINCSATGKPQPTITWKRNGKPLDDFPSTHHKML--DDRIIILKAEQKDTAVYQCEAS 408

  Fly   437 NEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPI 501
            |:.|                   ..||...:|                                :
Zfish   409 NKHG-------------------SLLANANVL--------------------------------V 422

  Fly   502 MELPPQNVT-------ALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLLISN 559
            |..||..:|       .:.||...:.|....||...:.|...:.:......|..:|::|.|.|..
Zfish   423 MNHPPLILTRNYLEYATMLGKSVIMDCNVFSSPPATLNWRREDPEGSVDGERYSLLKNGSLQIHK 487

  Fly   560 IRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNI 624
            :...|.|.|.|:..|..|:......|.:...|:|::.|.|..|:.|..|.|:|:|..|||:...:
Zfish   488 VEMEDMGQYKCLANNSEGTASITTELFIKDSTRIVEAPQDMKVIRGSVAELECQVECDPSLRREL 552

  Fly   625 D--WYREGQSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPF 687
            :  |.::|.:.  :|||.......:|.|:|..|..||.|:|.|:|.:....:|.:|.::|:::|.
Zfish   553 EFVWLKDGINI--LSNSSERYFTDEGILQIFNVSHSDQGNYTCIVRTSLDQDTASAYITVLDVPD 615

  Fly   688 PPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSAD 752
            ||..:.:..|   :.||:.:.|....|.||||::||||..| |...|.     .| .:|..||: 
Zfish   616 PPVELLLSDL---KDRSVKLHWVNTSDHNSPITEFIIQYEE-SHWEPE-----KW-KDLLRVSS- 669

  Fly   753 QRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQW 817
            :::.....|.....|||||.|||.:|...||.||...:.|..||...|...........::...|
Zfish   670 RKFSAPLALYCHINYQFRVIAVNEIGRSHPSMPSGRYKTPPCAPDRNPENIKIEGHLPHQMDISW 734

  Fly   818 QPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITWKDYIVQIAAYNNMGV 882
            :|.|....||..|.|.|.|||.|..: .|..|.:   .:.:|::::..|:..|.|:|.|:|..| 
Zfish   735 EPLLPVEHNGPGLEYKLSYRLLGVED-SWKEQMV---KRHSFVVRDTPTFVPYEVKIQAFNRHG- 794

  Fly   883 GVYTEGSKIKT------------KEG---VPEAPPTNVKVEAINSTAARCRWTPPNPQQINGINQ 932
              :..|.|:.|            .||   ||...|.||..|.:|||..:..|:|.....:.|...
Zfish   795 --WAPGPKVVTGYSGEDFDIWHCLEGDATVPLVAPDNVSAEVLNSTLLKVSWSPVPQTTLRGHLG 857

  Fly   933 GYKIQAWQ-RRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGV 996
            ||.:..|| :.|:..:....||:..|:|.:      ....::.||:.|:||:::|..|...|:|.
Zfish   858 GYTVNYWQTQSLLTSKKIPSERQSLTIPGN------RSHTMVPGLKPFSEYSLTVNVFNRRGNGP 916

  Fly   997 ASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDT---LKS 1058
            :||.::..|...||::...|...:....::.::||||..:||.||||.::||.....:|   |.|
Zfish   917 SSSPISFTTPQGVPEQPHYLKATNFQKDAITLVWAPPHETNGHLTGYLLQYQTVVDNETLGELNS 981

  Fly  1059 FNLT-ADDTELTVNQLQATTHYWFEIVAWTRVGSG--------------------IPKTATIQ-- 1100
            .|:: ||.|:..:..||....|.|.:.|.|:||.|                    .|:.:|:.  
Zfish   982 VNISGADTTQWVLRDLQEDNSYKFYLSACTQVGCGSAISEKGGTDPAAFTKPEYSFPEVSTVSAW 1046

  Fly  1101 --------SGVEPVLPHAPTALALSNIE------AFS--VVLQFTPGFDGNSSITKWKVEGQTAR 1149
                    |.|.......|.:...||.:      .||  |||..:......|:...|:..|:.:.
Zfish  1047 TESYELSTSEVTTSELRQPFSFTSSNTDIPFVNATFSTLVVLNVSTFVRDTSARISWRTRGEHSD 1111

  Fly  1150 NMTWFTICEINDPD-----AETLT-------VTGLVPFTQYRLRLSASNVVGSSKPSEATKDFQT 1202
            :..:..|  :|..|     :|.|.       |.||.|.|.|.:||.||..||  .||...:.|:|
Zfish  1112 SQLYVAI--MNHRDGIWQLSEALNTSKGFHLVEGLSPGTVYTVRLQASRRVG--VPSIFEEVFKT 1172

  Fly  1203 IQARPKHPPFNVTVRAMSAQQLRVRWIPLQQTEWY 1237
            .:|..:        :.|.:|            ||:
Zfish  1173 RKASSR--------QEMGSQ------------EWF 1187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 22/81 (27%)
Ig 280..344 CDD:409353 15/64 (23%)
Ig strand B 280..283 CDD:409353 2/2 (100%)
Ig strand C 292..298 CDD:409353 2/5 (40%)
Ig strand E 319..323 CDD:409353 1/3 (33%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 22/91 (24%)
Ig strand B 378..382 CDD:409353 0/3 (0%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 0/3 (0%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 0/2 (0%)
Ig 502..587 CDD:472250 22/91 (24%)
Ig strand B 517..521 CDD:409353 0/3 (0%)
Ig strand C 530..534 CDD:409353 0/3 (0%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 29/91 (32%)
Ig strand B 608..612 CDD:409353 2/3 (67%)
Ig strand C 623..627 CDD:409353 0/5 (0%)
Ig strand E 648..652 CDD:409353 2/3 (67%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 1/2 (50%)
FN3 686..789 CDD:238020 37/102 (36%)
FN3 798..893 CDD:238020 25/94 (27%)
FN3 901..1005 CDD:238020 30/104 (29%)
FN3 <960..>1261 CDD:442628 84/332 (25%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
chl1aXP_068072887.1 Ig 32..125 CDD:472250 28/105 (27%)
Ig strand B 51..55 CDD:409396 1/3 (33%)
Ig strand C 64..68 CDD:409396 2/3 (67%)
Ig strand E 89..93 CDD:409396 1/3 (33%)
Ig strand F 105..110 CDD:409396 2/4 (50%)
Ig strand G 119..122 CDD:409396 2/2 (100%)
Ig 134..224 CDD:472250 17/116 (15%)
Ig strand B 148..152 CDD:409432 0/3 (0%)
Ig strand C 162..166 CDD:409432 0/3 (0%)
Ig strand E 185..189 CDD:409432 0/3 (0%)
Ig strand F 200..205 CDD:409432 1/4 (25%)
Ig strand G 216..219 CDD:409432 1/2 (50%)
Ig 250..331 CDD:472250 16/90 (18%)
Ig strand B 262..266 CDD:409394 2/3 (67%)
Ig strand C 275..279 CDD:409394 2/5 (40%)
Ig strand E 296..300 CDD:409394 1/3 (33%)
Ig strand F 310..315 CDD:409394 2/4 (50%)
Ig strand G 323..326 CDD:409394 0/2 (0%)
Ig 336..422 CDD:472250 24/139 (17%)
Ig strand B 352..356 CDD:409367 0/3 (0%)
Ig strand C 365..369 CDD:409367 0/3 (0%)
Ig strand E 389..393 CDD:409367 0/3 (0%)
Ig strand F 402..407 CDD:409367 2/4 (50%)
Ig strand G 415..418 CDD:409367 2/2 (100%)
Ig 429..513 CDD:472250 18/83 (22%)
Ig strand B 445..449 CDD:409544 0/3 (0%)
Ig strand C 458..462 CDD:409544 0/3 (0%)
Ig strand E 481..485 CDD:409544 2/3 (67%)
Ig strand F 495..500 CDD:409544 2/4 (50%)
Ig strand G 508..511 CDD:409544 0/2 (0%)
Ig 517..617 CDD:472250 32/101 (32%)
Ig strand B 536..540 CDD:409359 2/3 (67%)
Ig strand C 553..557 CDD:409359 0/3 (0%)
Ig strand E 576..580 CDD:409359 2/3 (67%)
Ig strand F 590..595 CDD:409359 2/4 (50%)
Ig strand G 603..606 CDD:409359 1/2 (50%)
FN3 614..703 CDD:238020 35/99 (35%)
fn3 717..797 CDD:394996 23/86 (27%)
FN3 <783..1099 CDD:442628 87/324 (27%)
FN3 1092..1172 CDD:238020 23/83 (28%)
Bravo_FIGEY 1209..1290 CDD:464016
Blue background indicates that the domain is not in the aligned region.

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