DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and paplna

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_005169942.1 Gene:paplna / 562930 ZFINID:ZDB-GENE-070815-4 Length:1187 Species:Danio rerio


Alignment Length:765 Identity:156/765 - (20%)
Similarity:247/765 - (32%) Gaps:231/765 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KSAASSLRRR------RPKTTITATLAIEMPSQPKLASLLAVLVLLCYCDSC------------- 48
            ||..|.||.|      |.:....|......|..|.:.|        |....|             
Zfish   514 KSCGSGLRERQVICSDRQRNLYRAEECQGKPKPPTVES--------CNAQPCYRPQEVPSMQDPT 570

  Fly    49 --------FFCYADANLQQQNSIVQQQQLQAPR---FTTHPSSSG-SIVSEGSTKILQCHALGYP 101
                    |..|::..|.:   |.|.....:|.   .|.|.|.:. ....:|.|........|.|
Zfish   571 GHDNTLHGFMPYSEDPLLE---IPQNNAAHSPHGTALTPHCSQTQYGCCPDGRTPASGPQHQGCP 632

  Fly   102 ----QPTYRWLK-----DGVPVGDFSSSQFYRFHSTRREDAGSYQCIARNDAGSIFSEKSDVVVA 157
                ||:..|.:     |||.|....:.:               .|   .||.:.:|..||.|.:
Zfish   633 QDQGQPSCTWSRYGCCHDGVTVAQGQNME---------------GC---PDAWTHWSSSSDTVPS 679

  Fly   158 YMGIFENTTEG----RLTVISG-HPAIFDMPPIE-----SIPVPSVM-----WQSEDGPLNYD-- 205
            ......::|.|    .:|..|| |......||..     |..:|:.:     |.|.   ..:|  
Zfish   680 APVDCHSSTYGCCYDGVTAASGTHGEGCSNPPSNTQRSLSCDLPNTVGPCDQWTSR---FYFDRS 741

  Fly   206 ------IKYAFTHANQLIILSADEND--------RKGYRAKAINTQLGKEESSAFVHLNVSGDPY 256
                  ..|...|.|.....|.:|..        |:..:|..::.|.|:....|.|.|:.||...
Zfish   742 ASRCLHFWYGGCHGNSNNFASEEECQKMCLRSELRQRDQAHVLSLQHGRRRFPAHVQLSSSGAHR 806

  Fly   257 IEVAPEIIVRPQDVKVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTL 321
            .:.|.                    |..:||.........|..:|::::.       .||     
Zfish   807 AQRAH--------------------QPASNAMQQSNPAASWTAEGVSIDK-------TDP----- 839

  Fly   322 ALLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVG 386
                                                          :...|..|.:|.|.|.|..
Zfish   840 ----------------------------------------------STVEGLVGQRVVLPCRVTP 858

  Fly   387 EPTPQ--VKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLR 449
            .|:..  |:|.|:...||    ..|:....|.:|::..:.|.|:..|.|:|..:...:....:|.
Zfish   859 PPSSAVLVEWRRDGVPVD----PTRHEQQLDGSLLVGPITLQDSGWFLCVATRDDKRDHRYIYLS 919

  Fly   450 VKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDG 514
            |...:..|                 ||:.....|:|.:|.....|....:|::|       |..|
Zfish   920 VSGSSQNN-----------------AGISEVDSSQSYTSQSSSRFNIDYSPLVE-------ARAG 960

  Fly   515 KDATISCRAVGSPNPNITWIYNETQLVDISSRVQILES--------GDLLISNIRSVDAGLYICV 571
            :.|.:.|..:     .::.|:..|  :..|...|.|.|        |.|:|..:.:.|:|||.|.
Zfish   961 QTAKLQCSVL-----PVSAIHAVT--IHWSRAGQPLNSLRHSQHSDGTLVIKQLTADDSGLYTCT 1018

  Fly   572 RANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPI 636
            ..:.....:.:..|.||...:|.:.|:|..|:.|.||.|.|.|:.:   ..|:.|.|.|....| 
Zfish  1019 VTDAQKFEERQVQLRVLGDLRITKAPIDVDVVQGSTAQLACVVTGE---NVNVGWSRNGVPVRP- 1079

  Fly   637 SNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELP 686
             :..|:.|.|||.|.:..|::.|.|:|.|...:...:.:.||.:.:.:.|
Zfish  1080 -DGHRVHVSADGTLILNNVQSVDEGTYTCNAYTGTLSVSAAAEIRLAKTP 1128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 22/98 (22%)
I-set 72..150 CDD:254352 18/90 (20%)
Ig 172..245 CDD:299845 19/99 (19%)
IG_like 280..356 CDD:214653 7/75 (9%)
Ig 280..343 CDD:299845 7/62 (11%)
IG_like 375..450 CDD:214653 20/76 (26%)
Ig 378..447 CDD:143165 18/70 (26%)
Ig 506..587 CDD:299845 19/88 (22%)
IG_like 506..587 CDD:214653 19/88 (22%)
I-set 592..682 CDD:254352 28/89 (31%)
Ig 595..682 CDD:299845 27/86 (31%)
FN3 686..789 CDD:238020 1/1 (100%)
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
paplnaXP_005169942.1 TSP1 24..75 CDD:214559
ADAM_spacer1 181..293 CDD:310520
TSP1 303..356 CDD:214559
TSP1 388..442 CDD:214559
TSP1 449..498 CDD:214559
TSP1 504..557 CDD:214559 12/50 (24%)
KU 720..771 CDD:238057 9/53 (17%)
Ig_3 839..906 CDD:316449 20/121 (17%)
IGc2 960..1022 CDD:197706 17/68 (25%)
I-set 1039..1121 CDD:333254 27/86 (31%)
PLAC 1142..1173 CDD:312271
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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