DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and robo4

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:1113 Identity:234/1113 - (21%)
Similarity:377/1113 - (33%) Gaps:353/1113 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 GGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDN-TLVIKKLILDDAAMFQCLAI-N 437
            |....|:|...|.|.|.::|.||.:.:|           ||. ....:.::|.|.::|....: .
Zfish    85 GSPATLSCRAEGNPEPTIQWLRNGQPLD-----------TDKMDAQSQPIVLPDGSLFFFSVVPG 138

  Fly   438 EAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIM 502
            ..|::..:.:..:...:..|...|.|...|..:                    |::||       
Zfish   139 RKGQSHEAVYACIAHNSIGNATSRNASLHIAAL--------------------REDFR------- 176

  Fly   503 ELPPQNVTALDGKDATISCR-AVGSPNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAG 566
             :.|.:|....|:.|||:|. .||.|.||:|| ..:..|::.|:.......|.|:|:..:..|:|
Zfish   177 -VQPSDVEVAIGEMATINCSPPVGHPEPNVTW-RKDGILINSSNEHYTELKGKLIIAPAQKNDSG 239

  Fly   567 LYICVRANEAGSVKGE-AYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREG 630
            :|.|:.:|..|..:.. |.||||.:..:::.|.|.:|.||.:|...|:...|| :| :|:|.|| 
Zfish   240 VYSCIASNMIGVRESRAARLSVLAKPVLLRKPEDVSVQLGESAQFFCEADGDP-MP-SIEWSRE- 301

  Fly   631 QSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSV----------IEL 685
              ..|:.|.:.: :..|..|:|..|.|.|:|.|:|.|.:..|....:|:|.|          :..
Zfish   302 --QGPLPNGRYL-INPDHSLQIHYVTAQDMGRYSCTVENKLGVSVASAQLLVEDAGGTRLRDLHK 363

  Fly   686 PFPPSNVKVERLPEPQQRS--INVSWTPGFDGNSP--ISKFIIQRREVSELGP------VPDPLL 740
            ......|.:|.:......|  ..|.|.....|:.|  :..|.:..|.:.....      ||.|.|
Zfish   364 ELSALRVSLENVTVMSTASNMSQVMWKLQSFGSQPHYLEGFEVLYRSLLPASSDWTAQRVPQPSL 428

  Fly   741 NWITELSNVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNV--VELPQEAPSGPP--V 801
            :     ::|..         ||....|:|:   |...|.......||.  :.:|:..||..|  |
Zfish   429 H-----THVGP---------LKRGYKYEFK---VRPYGSSLYGRESNTRHLRVPEIVPSAAPQDV 476

  Fly   802 GFVGSARSMSEIITQWQPPLEEHRNGQILGY----ILRYRLFGYNNVPWSYQNITNEAQRNFLIQ 862
            .....|.....:...|:||..:..||.|.||    :.......:|   |:..:.|:..:...|:.
Zfish   477 SITMPAERNDTVHLSWEPPPHDAHNGIIQGYQVWCVESEEQTSFN---WTVDSGTHSIEIFTLLP 538

  Fly   863 ELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPP------------TNVKVEAINSTAA 915
            ..:.|    |.:||.|..||||.::..|:..:..: ||.|            :.:|......:..
Zfish   539 SRLYW----VTVAAVNGAGVGVQSDPYKLLIESRL-EATPYQTGILSMSHFVSVIKEPVFIGSVG 598

  Fly   916 RCRW---------------TPPNPQQINGINQG-YKIQAWQRRLIDGEWRDIERRMKTVPPSLID 964
            ...|               .|.||   :|.:.| |::::  ..||      |:.|| ..|.|   
Zfish   599 TLLWCVLMITAVFLYRRHIRPANP---SGKSSGLYRLES--EDLI------IKHRM-AAPDS--- 648

  Fly   965 PLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVL 1029
                 ..|.||..              ||......|                           .|
Zfish   649 -----PWISGGWR--------------PGSNSEPKQ---------------------------GL 667

  Fly  1030 WAPPRASNGILTGYTVRYQVKDRPDTLKSFNLTADD---------TELTVNQLQATTHYWFEIVA 1085
            |.|.:.::| |...|:...||..|:.|:|......|         .:||.|.|:           
Zfish   668 WTPSQENSG-LRRTTLPITVKKDPNPLRSAVPIVPDNCGVYGTFYVDLTGNGLK----------- 720

  Fly  1086 WTRVGSGIPKTATIQS-GVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTAR 1149
                        |..| |..|.:||                        |||.:.    ..:|.|
Zfish   721 ------------TFNSPGRCPRMPH------------------------GNSQLQ----NSETIR 745

  Fly  1150 NMTWFTICEINDPDAETLTVTGL--VPFTQYRLRLSASNVVGSSKPS---EATKDFQTIQARPKH 1209
                     |.:|..:|..|..|  :|   ::..|.|...:|..|.|   ...::...:::.|..
Zfish   746 ---------ITEPIVKTAVVRELQALP---WKRTLPAQPNMGVKKESWEKNVKRELHAVKSAPLM 798

  Fly  1210 PPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRG----------------YNISYKQLVKTPGTIK 1258
            |        ::.|.|.|...|..|..:..:|.|                |:.|.:.:...|.   
Zfish   799 P--------LNQQALAVCSAPNHQQRFSQHPAGGVSEPVKPLSSPRILHYSASLQLVDMLPS--- 852

  Fly  1259 YVPRSVVIEDHTANSHVLDSLEEWTLYEVKMN------------------ACNDVGCSKESDTAV 1305
              |..:.:||    :|.|.|.:|.| ...|:.                  |..:.||......| 
Zfish   853 --PPPLPMED----NHSLSSEDEST-RSTKLTVDIGSQQSVCAASGLQGPASANTGCPNNHSPA- 909

  Fly  1306 ERTREAVPSYGPL---------DVQANATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQ 1361
                :..|||..|         |...:.|.||....|:.|:                :...:||.
Zfish   910 ----QLSPSYSHLSTASFCLSTDDYQDTTLSTQGHTQYMEI----------------SPKPQGQS 954

  Fly  1362 VLHKTIPN 1369
            ..|::.|:
Zfish   955 TSHQSTPS 962

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653 16/76 (21%)
Ig 378..447 CDD:143165 15/70 (21%)
Ig 506..587 CDD:299845 27/82 (33%)
IG_like 506..587 CDD:214653 27/82 (33%)
I-set 592..682 CDD:254352 29/89 (33%)
Ig 595..682 CDD:299845 29/86 (34%)
FN3 686..789 CDD:238020 22/114 (19%)
FN3 798..893 CDD:238020 25/100 (25%)
FN3 901..1005 CDD:238020 22/131 (17%)
fn3 1011..1094 CDD:278470 16/91 (18%)
FN3 1108..1202 CDD:238020 18/98 (18%)
FN3 1210..1308 CDD:238020 24/131 (18%)
fn3 1317..1402 CDD:278470 11/62 (18%)
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317 19/94 (20%)
I-set 71..168 CDD:254352 19/93 (20%)
I-set 175..261 CDD:254352 29/94 (31%)
Ig2_Robo 177..261 CDD:143201 27/84 (32%)
I-set 265..350 CDD:254352 29/90 (32%)
Ig 282..350 CDD:299845 24/73 (33%)
FN3 373..448 CDD:214495 18/91 (20%)
FN3 472..560 CDD:238020 24/94 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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