DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and nrcama

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_005164693.1 Gene:nrcama / 556537 ZFINID:ZDB-GENE-041210-235 Length:1324 Species:Danio rerio


Alignment Length:1272 Identity:309/1272 - (24%)
Similarity:502/1272 - (39%) Gaps:242/1272 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LQAPRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRWLKDG-------------VP-----VG 115
            |..|...|:.|....|:.......:.|.|.|.|.|::.|.::|             :|     |.
Zfish    42 LPQPPTITNQSPKDYIIDPRENINIFCEAKGKPHPSFSWTRNGTHFDVEKDPKVVMMPGTGNLVI 106

  Fly   116 DFS--SSQFYRFHSTRREDAGSYQCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPA 178
            |.|  .::.|.         |.|||||||:.||..|....:..:...::.......:||..|...
Zfish   107 DISGEKAEVYE---------GVYQCIARNEHGSAVSNNIVIRQSRSPLWSKEKNEPITVQRGTSL 162

  Fly   179 IFDMPPIESIPVPSVMWQSED-----------GPLNYDIKYAFTHANQLIILSADENDRKGYRAK 232
            |....|...:|.|.:.|...:           ..||.|:.::      .:|:....||...| |:
Zfish   163 ILQCRPPAGLPPPIIFWMDNNFQRLPQNSRVSQALNGDLYFS------NVIMEDTRNDYICY-AR 220

  Fly   233 AINTQLGKEES-----------------SAFVHLNVS---GD-PYIEVAPEIIVRP--QDVKVKV 274
            ..:||..:::.                 :||  ||.|   || |..|..|..:..|  :...:.:
Zfish   221 FPHTQTIQQKQPITVKVLDIEAMNDTVLAAF--LNGSDFWGDSPSGERVPSFLHPPGMESTTMVL 283

  Fly   275 GTGVVELQCIANARPLHELETLWLK-DGLAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQV 338
            ....:||:|||:..|...:.  |.| :|   |....|.:... :.:||.:.:...:..|:|.|..
Zfish   284 KGDTLELECIADGLPTPNIS--WTKVNG---ELPSGRFSFYS-FQKTLKIKEVTEADGGDYRCIA 342

  Fly   339 RLRSGG----YPAVSASARLQILEPP-LFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNA 398
            :.|.|.    ...|..:|...|..|. |...|.      |.|   .|||||.|.|.|.:.|..|.
Zfish   343 KNRMGSSQHTITVVVRAAPFWISAPQNLILAPK------ETG---NLTCDVDGNPKPTITWSVNG 398

  Fly   399 ESVD-AHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRL 462
            ..:: :|.:..|..  :|..:.:..:....:|::||.|.|:.|...|:.::.|           |
Zfish   399 NPIESSHNDPSRKV--SDGVITLSDVQTGSSAVYQCNASNDYGYLLANAFVSV-----------L 450

  Fly   463 AQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSP 527
            |:|..:....:|                                 ..:.:....|.:.|.:.|||
Zfish   451 AEPPRVLTSLNH---------------------------------EYSVISNSRALLDCASFGSP 482

  Fly   528 NPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQ 592
            .|.||| :.::|.:..|....|.::|.|.|:..:..::|.|.|:.:|..|:.:...:|.|...|:
Zfish   483 LPKITW-FKDSQSILNSDLYHIHKNGTLEINVAQPQNSGKYTCIASNNLGNKENHVHLQVKEPTR 546

  Fly   593 IIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRA 657
            ||:.|....|.....|..:|||..||::..::.|.::   :..:.:..|..|.:| .|.|..|..
Zfish   547 IIRQPEYKEVQRNSIAVFECKVKHDPTLIPSMIWLKD---NGELPDDPRFEVGSD-SLTIHDVTE 607

  Fly   658 SDVGSYACVVTSPGGNETRAARLSVIEL----------PFPPSNVKVERLPEPQQRSINVSWTPG 712
            .|.|:|.|:..:....::.:|.|:|:|.          |.||::::   |.:.::||:.::||||
Zfish   608 DDEGTYTCIRNTTLDQDSASATLTVVEATPTPTMILEQPDPPTDLE---LTDQRERSVRLTWTPG 669

  Fly   713 FDGNSPISKFIIQRRE-VSELGPVPDPLLNWITELSNVSADQRWILLENLKAATVYQFRVSAVNR 776
            .:.||||..|:||..: :.|    |...|| :||:|..|...:   || |.....|.|||.|:|.
Zfish   670 DEHNSPIKLFLIQYEDSLHE----PGVWLN-MTEVSGTSTTAQ---LE-LSPYVYYSFRVLALNG 725

  Fly   777 VGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGY 841
            ||....|:||.........|...|.....|..|...:...|:.......||..|.|.:.:|:  .
Zfish   726 VGLSESSDPSRQYRTNPAKPDVNPSDVEVSGTSPDTMTISWRELSGLESNGPGLQYKVSWRM--K 788

  Fly   842 NNVPWSYQNITNEAQRNFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVK 906
            :...|:...:.|.:|.  ::....|:..|.|.:.|.|:.|.|...|.....:.|..|...|.|||
Zfish   789 DAEQWTTVTLANVSQH--VVTGTPTFTLYEVTVQAVNDYGEGPRPEVVLGYSGENSPTVAPENVK 851

  Fly   907 VEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTA 971
            |...:.|.|...|.......:.|..:|||:...:.|.:..:..|.|.     |..||....|...
Zfish   852 VSVQSGTEAEVHWEAVPLSSVRGRLKGYKVTYQKMRSLHKQDYDREN-----PQVLIFSGEETVG 911

  Fly   972 ILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRAS 1036
            .|..|..::.|.:::..|...|||.:|:.....|.:.||...|.::..:::..|:.|.|.||...
Zfish   912 RLPDLHPYSHYRLNIRAFNGHGDGPSSTDQQFQTPEGVPGPPTNVNIRNLNLDSLLVEWTPPLED 976

  Fly  1037 NGILTGYTVRYQ---VKDRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSG--IPKT 1096
            ||.||||.::||   ..:....||...|.|::|..|:::|..:|||.|.:.|.|..|||  :.|.
Zfish   977 NGHLTGYLLKYQPINTTEEAGLLKEVLLPANETSYTLDKLTHSTHYKFFLNAMTETGSGPAVTKE 1041

  Fly  1097 ATIQ--------------SGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDG----------NSS 1137
            |..:              .|..|..|..||.....:::         |.|..          |||
Zfish  1042 AFTEVDEALIRHPAVEAGKGSAPPSPPPPTPPVTQSLQ---------PPFQAPPAGPMFGNVNSS 1097

  Fly  1138 ITK------WKVEGQTARNMTWFTICEINDP-------DAETLTVTGLVPFTQYRLRLSASNVVG 1189
            :.:      |:..|........:.:....:|       ...|..:.||.|...||:||.|.:  .
Zfish  1098 VKEDHAVISWEYLGPDGNVYVEYVVDNSKEPWKTEFVNGTRTFQIRGLKPGMSYRVRLVAKD--H 1160

  Fly  1190 SSKPSEATKDFQTIQARPKHPPFNVTVRAMSAQQLRV 1226
            |.....:|::..            :||.||:.:|..:
Zfish  1161 SDATIHSTQEML------------ITVPAMTNRQAEI 1185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 22/89 (25%)
Ig 280..344 CDD:409353 17/64 (27%)
Ig strand B 280..283 CDD:409353 2/2 (100%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 2/3 (67%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 24/92 (26%)
Ig strand B 378..382 CDD:409353 1/3 (33%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 0/3 (0%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 21/84 (25%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 2/3 (67%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 23/89 (26%)
Ig strand B 608..612 CDD:409353 1/3 (33%)
Ig strand C 623..627 CDD:409353 0/3 (0%)
Ig strand E 648..652 CDD:409353 1/3 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 39/103 (38%)
FN3 798..893 CDD:238020 20/94 (21%)
FN3 901..1005 CDD:238020 27/103 (26%)
FN3 <960..>1261 CDD:442628 75/309 (24%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
nrcamaXP_005164693.1 Ig 46..139 CDD:472250 26/101 (26%)
Ig strand B 64..68 CDD:409458 0/3 (0%)
Ig strand C 77..81 CDD:409458 0/3 (0%)
Ig strand E 102..106 CDD:409458 0/3 (0%)
Ig strand F 119..124 CDD:409458 3/4 (75%)
Ig strand G 133..136 CDD:409458 1/2 (50%)
Ig 148..238 CDD:472250 18/96 (19%)
Ig strand B 162..166 CDD:409432 1/3 (33%)
Ig strand C 176..180 CDD:409432 0/3 (0%)
Ig strand E 199..203 CDD:409432 1/3 (33%)
Ig strand F 214..219 CDD:409432 2/5 (40%)
Ig strand G 230..233 CDD:409432 0/2 (0%)
Ig3_L1-CAM_like 276..358 CDD:409394 19/87 (22%)
Ig strand B 288..292 CDD:409394 2/3 (67%)
Ig strand C 301..305 CDD:409394 0/5 (0%)
Ig strand E 323..327 CDD:409394 2/3 (67%)
Ig strand F 337..342 CDD:409394 2/4 (50%)
Ig strand G 350..353 CDD:409394 0/2 (0%)
Ig 362..450 CDD:472250 27/109 (25%)
Ig strand B 378..382 CDD:409454 2/6 (33%)
Ig strand C 391..395 CDD:409454 0/3 (0%)
Ig strand E 415..419 CDD:409454 0/3 (0%)
Ig strand F 429..434 CDD:409454 2/4 (50%)
Ig strand G 442..445 CDD:409454 1/2 (50%)
I-set 466..541 CDD:400151 21/75 (28%)
Ig strand B 472..476 CDD:409544 1/3 (33%)
Ig strand C 485..489 CDD:409544 3/4 (75%)
Ig strand E 507..511 CDD:409544 2/3 (67%)
Ig strand F 521..526 CDD:409544 2/4 (50%)
Ig strand G 534..537 CDD:409544 0/2 (0%)
Ig 546..632 CDD:472250 23/89 (26%)
Ig strand B 562..566 CDD:409390 1/3 (33%)
Ig strand C 577..581 CDD:409390 0/3 (0%)
Ig strand E 599..602 CDD:409390 1/2 (50%)
Ig strand F 612..617 CDD:409390 2/4 (50%)
Ig strand G 625..628 CDD:409390 0/2 (0%)
FN3 646..736 CDD:238020 38/101 (38%)
FN3 748..834 CDD:238020 20/89 (22%)
fn3 846..938 CDD:394996 26/96 (27%)
fn3 951..1036 CDD:394996 29/84 (35%)
fn3 1096..1157 CDD:394996 13/60 (22%)
Bravo_FIGEY 1212..1300 CDD:464016
Blue background indicates that the domain is not in the aligned region.

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