DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and NCAM1

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001387553.1 Gene:NCAM1 / 4684 HGNCID:7656 Length:1129 Species:Homo sapiens


Alignment Length:1204 Identity:247/1204 - (20%)
Similarity:387/1204 - (32%) Gaps:412/1204 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 SSGSIVSEGSTKILQCHALG-YPQPTYRWLKDG----VP-------VGDFSSSQFYRFHSTRRED 132
            |.|.| |.|.:|...|...| .......|....    .|       |.:..||.....::...:|
Human    27 SQGEI-SVGESKFFLCQVAGDAKDKDISWFSPNGEKLTPNQQRISVVWNDDSSSTLTIYNANIDD 90

  Fly   133 AGSYQCIARNDAGSIFSEKSDVVVAYMGIFENT---TEGRLTVISGHPAIFDMPPIESIPVPSVM 194
            ||.|:|:...:.||......:|.:....:|:|.   .|.|    .|..|:.....:.|:| |:::
Human    91 AGIYKCVVTGEDGSESEATVNVKIFQKLMFKNAPTPQEFR----EGEDAVIVCDVVSSLP-PTII 150

  Fly   195 W--QSEDGPLNYDIKYAFTHANQLIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYI 257
            |  :..|..|..|:::.....|.|.|....:.|...||.:.                        
Human   151 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG------------------------ 191

  Fly   258 EVAPEIIVRPQDVKVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTLA 322
                .|:.| .::..|      ::|.|.|..|                                 
Human   192 ----RILAR-GEINFK------DIQVIVNVPP--------------------------------- 212

  Fly   323 LLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGE 387
                        |.|.|..     .|:|:|.|                    |..|.|.||..|.
Human   213 ------------TIQARQN-----IVNATANL--------------------GQSVTLVCDAEGF 240

  Fly   388 PTPQVKWFRNAESVDAHIESGRYTLNTDNT-LVIKKLILDDAAMFQCLAINEAGENSASTWLRVK 451
            |.|.:.|.::.|.::...:..:|..:.|:: |.|||:..:|.|.:.|:|.|:|||..|:..|:| 
Human   241 PEPTMSWTKDGEQIEQEEDDEKYIFSDDSSQLTIKKVDKNDEAEYICIAENKAGEQDATIHLKV- 304

  Fly   452 TKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALD-GK 515
                      .|:|:|..|                                    :|.||:: .:
Human   305 ----------FAKPKITYV------------------------------------ENQTAMELEE 323

  Fly   516 DATISCRAVGSPNPNITWIYNETQLVDISS-------RVQILESGD-------------LLISNI 560
            ..|::|.|.|.|.|:|||   .|...:|||       |.:..|:.|             |.:.:|
Human   324 QVTLTCEASGDPIPSITW---RTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSI 385

  Fly   561 RSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNID 625
            :..|||.|||..:|..|......||.|....: :|.||......|....:.|:|.:.||.  .|.
Human   386 QYTDAGEYICTASNTIGQDSQSMYLEVQYAPK-LQGPVAVYTWEGNQVNITCEVFAYPSA--TIS 447

  Fly   626 WYREGQ--SSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFP 688
            |:|:||  .|:..||.:.....:...||:.....:|.|:|.|...:..|.|:....|...:.|..
Human   448 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSS 512

  Fly   689 PSNVKVERLPEPQQRSINVSW-TPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSAD 752
            ||..:|    ||...:..|.: .|...|..||.|:..:.|.|.|        ..|         .
Human   513 PSIDQV----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE--------EVW---------H 556

  Fly   753 QRW-----------ILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGP----PVG 802
            .:|           :.:..||..|.|..|::|:|..|.|..|..|.....|...||.|    .:|
Human   557 SKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMG 621

  Fly   803 FVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITW 867
            ..|::..::.|       .::.....|..|::|||.......|    .|...:..:.::.:.:.|
Human   622 EDGNSIKVNLI-------KQDDGGSPIRHYLVRYRALSSEWKP----EIRLPSGSDHVMLKSLDW 675

  Fly   868 K-DYIVQIAAYNNMGVGVYTEGSKIKTKEGV--PEAPPTNVKVEAINSTAARCRWTPPNPQQING 929
            . :|.|.:.|.|..|        |.|....|  ..|.||.:               |.|....:|
Human   676 NAEYEVYVVAENQQG--------KSKAAHFVFRTSAQPTAI---------------PANGSPTSG 717

  Fly   930 INQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNIS----VLCFT 990
            ::.|                           :::..|.....:|..:...|.|.::    .:|..
Human   718 LSTG---------------------------AIVGILIVIFVLLLVVVDITCYFLNKCGLFMCIA 755

  Fly   991 -----DPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVK 1050
                 ..|.|....        |:.:.......|:..:..|:|.....|..|.....:|      
Human   756 VNLCGKAGPGAKGK--------DMEEGKAAFSKDESKEPIVEVRTEEERTPNHDGGKHT------ 806

  Fly  1051 DRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALA 1115
             .|:         :.|.||..:|.|.|                  |||    ||.:||...|...
Human   807 -EPN---------ETTPLTEPELPADT------------------TAT----VEDMLPSVTTVTT 839

  Fly  1116 LSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRL 1180
            .|:                  :||:.....|             |.|.:||.|:|..:       
Human   840 NSD------------------TITETFATAQ-------------NSPTSETTTLTSSI------- 866

  Fly  1181 RLSASNVVGSSKPSEATKDFQTI---QARPKHPP 1211
                      :.|:.||.|..::   ||.|...|
Human   867 ----------APPATATPDSNSVPAGQATPSKGP 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 18/73 (25%)
Ig 280..344 CDD:409353 7/63 (11%)
Ig strand B 280..283 CDD:409353 0/2 (0%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 0/3 (0%)
Ig strand F 333..338 CDD:409353 1/4 (25%)
Ig 360..451 CDD:472250 26/91 (29%)
Ig strand B 378..382 CDD:409353 2/3 (67%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 1/4 (25%)
Ig strand F 430..435 CDD:409353 1/4 (25%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 31/105 (30%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 2/3 (67%)
Ig strand E 554..557 CDD:409353 2/15 (13%)
Ig strand F 567..572 CDD:409353 3/4 (75%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 25/91 (27%)
Ig strand B 608..612 CDD:409353 0/3 (0%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 1/3 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 28/114 (25%)
FN3 798..893 CDD:238020 18/99 (18%)
FN3 901..1005 CDD:238020 13/112 (12%)
FN3 <960..>1261 CDD:442628 47/264 (18%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
NCAM1NP_001387553.1 IgI_1_NCAM-1 20..116 CDD:409451 21/89 (24%)
Ig strand A 20..25 CDD:409451
Ig strand A' 28..32 CDD:409451 2/4 (50%)
Ig strand B 34..44 CDD:409451 3/9 (33%)
Ig strand C 50..56 CDD:409451 1/5 (20%)
Ig strand C' 59..61 CDD:409451 0/1 (0%)
Ig strand D 69..75 CDD:409451 1/5 (20%)
Ig strand E 77..85 CDD:409451 2/7 (29%)
Ig strand F 92..100 CDD:409451 3/7 (43%)
Ig strand G 104..115 CDD:409451 2/10 (20%)
IG_like 124..190 CDD:214653 17/70 (24%)
Ig strand B 135..139 CDD:409353 1/3 (33%)
Ig strand C 148..152 CDD:409353 0/3 (0%)
Ig strand E 172..176 CDD:409353 2/3 (67%)
Ig 211..307 CDD:472250 35/176 (20%)
Ig strand B 231..235 CDD:409353 2/3 (67%)
Ig strand C 244..248 CDD:409353 0/3 (0%)
Ig strand E 270..274 CDD:409353 1/3 (33%)
Ig strand F 284..289 CDD:409353 1/4 (25%)
Ig strand G 297..300 CDD:409353 1/2 (50%)
IgI_NCAM-1 306..412 CDD:143277 35/144 (24%)
Ig strand A 306..311 CDD:143277 2/4 (50%)
Ig strand A' 315..319 CDD:143277 2/3 (67%)
Ig strand B 324..332 CDD:143277 2/7 (29%)
Ig strand C 338..344 CDD:143277 3/8 (38%)
Ig strand C' 347..350 CDD:143277 1/2 (50%)
Ig strand D 368..374 CDD:143277 0/5 (0%)
Ig strand E 377..383 CDD:143277 1/5 (20%)
Ig strand F 391..399 CDD:143277 4/7 (57%)
Ig strand G 402..412 CDD:143277 3/9 (33%)
IG_like 421..499 CDD:214653 22/79 (28%)
Ig strand B 432..436 CDD:409353 0/3 (0%)
Ig strand C 445..449 CDD:409353 1/3 (33%)
Ig strand E 472..476 CDD:409353 1/3 (33%)
Ig strand F 486..491 CDD:409353 2/4 (50%)
fn3 511..598 CDD:394996 25/107 (23%)
fn3 612..693 CDD:394996 19/99 (19%)
PRK12323 <913..1108 CDD:481241
Blue background indicates that the domain is not in the aligned region.

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