DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and Dscam2

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster


Alignment Length:29 Identity:10/29 - (34%)
Similarity:19/29 - (65%) Gaps:2/29 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 IVMLMLYIPCFFAIVTSPLLKSPAYKTML 84
            :|:|::.|.|  ||||:..::..:.:|.|
  Fly     7 VVLLVIGILC--AIVTARQVEEVSKETKL 33

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 2/13 (15%)
Ig 280..344 CDD:409353
Ig strand B 280..283 CDD:409353
Ig strand C 292..298 CDD:409353
Ig strand E 319..323 CDD:409353
Ig strand F 333..338 CDD:409353
Ig 360..451 CDD:472250
Ig strand B 378..382 CDD:409353
Ig strand C 391..395 CDD:409353
Ig strand E 416..420 CDD:409353
Ig strand F 430..435 CDD:409353
Ig strand G 443..446 CDD:409353
Ig 502..587 CDD:472250
Ig strand B 517..521 CDD:409353
Ig strand C 530..534 CDD:409353
Ig strand E 554..557 CDD:409353
Ig strand F 567..572 CDD:409353
Ig strand G 580..583 CDD:409353
Ig 592..682 CDD:472250
Ig strand B 608..612 CDD:409353
Ig strand C 623..627 CDD:409353
Ig strand E 648..652 CDD:409353
Ig strand F 662..667 CDD:409353
Ig strand G 675..678 CDD:409353
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
FN3 <960..>1261 CDD:442628
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
Dscam2NP_001261500.1 Ig 30..128 CDD:472250 2/4 (50%)
Ig strand B 49..53 CDD:409353
Ig strand C 62..66 CDD:409353
Ig strand E 86..90 CDD:409353
Ig strand F 106..111 CDD:409353
Ig strand G 119..123 CDD:409353
V-set 138..229 CDD:462230
Ig 238..327 CDD:472250
Ig strand B 255..259 CDD:409353
Ig strand C 268..272 CDD:409353
Ig strand E 293..297 CDD:409353
Ig strand F 307..312 CDD:409353
Ig strand G 320..323 CDD:409353
Ig 330..418 CDD:472250
Ig strand B 348..352 CDD:409353
Ig strand C 365..369 CDD:409353
Ig strand E 383..387 CDD:409353
Ig strand F 397..402 CDD:409353
Ig strand G 411..414 CDD:409353
IgI_4_Dscam 422..517 CDD:409548
Ig strand A 422..425 CDD:409548
Ig strand A' 431..435 CDD:409548
Ig strand B 438..447 CDD:409548
Ig strand C 452..458 CDD:409548
Ig strand C' 460..463 CDD:409548
Ig strand D 468..476 CDD:409548
Ig strand E 480..489 CDD:409548
Ig strand F 496..504 CDD:409548
Ig strand G 507..517 CDD:409548
IgI_5_Dscam 521..608 CDD:409550
Ig strand A 521..523 CDD:409550
Ig strand A' 528..532 CDD:409550
Ig strand B 535..542 CDD:409550
Ig strand C 549..555 CDD:409550
Ig strand C' 556..558 CDD:409550
Ig strand D 565..569 CDD:409550
Ig strand E 572..578 CDD:409550
Ig strand F 586..594 CDD:409550
Ig strand G 598..608 CDD:409550
Ig 611..704 CDD:472250
Ig strand B 630..634 CDD:409353
Ig strand C 644..648 CDD:409353
Ig strand E 670..674 CDD:409353
Ig strand F 684..689 CDD:409353
Ig strand G 697..700 CDD:409353
IgI_7_Dscam 707..802 CDD:409546
Ig strand A 707..711 CDD:409546
Ig strand A' 716..720 CDD:409546
Ig strand B 723..732 CDD:409546
Ig strand C 738..744 CDD:409546
Ig strand C' 750..753 CDD:409546
Ig strand D 761..764 CDD:409546
Ig strand E 767..773 CDD:409546
Ig strand F 780..788 CDD:409546
Ig strand G 793..802 CDD:409546
Ig 806..892 CDD:472250
Ig strand B 823..827 CDD:409353
Ig strand C 836..840 CDD:409353
Ig strand E 868..872 CDD:409353
Ig strand F 882..887 CDD:409353
FN3 <904..1195 CDD:442628
FN3 906..1006 CDD:238020
fn3 1221..1306 CDD:394996
Ig 1336..1396 CDD:409353
Ig strand B 1336..1340 CDD:409353
Ig strand E 1371..1375 CDD:409353
Ig strand F 1385..1390 CDD:409353
FN3 <1407..>1606 CDD:442628
fn3 1408..1491 CDD:394996
Blue background indicates that the domain is not in the aligned region.

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