DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and wrapper

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_477404.1 Gene:wrapper / 37555 FlyBaseID:FBgn0025878 Length:500 Species:Drosophila melanogaster


Alignment Length:474 Identity:100/474 - (21%)
Similarity:163/474 - (34%) Gaps:146/474 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 VQLTCDVVGEPTPQVKWFR-NAESVDA-HIE---SGRYTLNTDNTLVIKKLILDDAAMFQCLAIN 437
            |||.| .:..|...|:|.| :...||: |.|   ..|..|..:.:|.:..:...|...:.|    
  Fly    52 VQLPC-TLNTPFRYVRWHRDDVALVDSRHPELPPPDRIMLWPNGSLQVANVQSSDTGDYYC---- 111

  Fly   438 EAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIM 502
                                                      |..|:||...::.......||.:
  Fly   112 ------------------------------------------EMNSDSGHVVQQHAIEVQLAPQV 134

  Fly   503 ELPPQNVTALD-GKDATISCRAVGSPNPNITWIYN-------------ETQLVDISSRVQILESG 553
            .:.|.::|... |....:.|.|.|.|.|.|||..|             ::.:::|.||.|     
  Fly   135 LIEPSDLTEQRIGAIFEVVCEAQGVPQPVITWRLNGNVIQPQSNTGNRQSLILEIKSRNQ----- 194

  Fly   554 DLLISNIRSVDAGLYICVRANEAGS-VKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSD 617
                       |||..||.:|..|. .....||.||...::..|.......||..|.|:|.|.:.
  Fly   195 -----------AGLIECVASNGVGEPAVANVYLHVLFSPEVSIPQPVVYTKLGSRAHLECIVEAA 248

  Fly   618 PSVPYNIDWYREGQSSTPI-----SNSQRIGVQADGQLE-----------IQAVRASDVGSYACV 666
            |:.  .:.|:..|   .|:     |.:....:|.:..::           :::||.:|:|.|.| 
  Fly   249 PAA--TVKWFHHG---LPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSVRNADMGQYEC- 307

  Fly   667 VTSPGGNETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNS------------PI 719
                     ||:.    ::.....:|::...|.|....||    ||...::            ||
  Fly   308 ---------RASN----QISVKSGSVELTGRPMPCLFKIN----PGTQSSTSHVLVWQTESLLPI 355

  Fly   720 SKFIIQRREVSELGPVPDPLLNWITELSNVSADQRWIL------LENLKAATVYQFRVSAVNRVG 778
            .:|.::.|::...........|| |||:..:.....::      |..|:.|::|:..|.|.|..|
  Fly   356 MEFKLKFRQIPSNNVTRQVRTNW-TELTIPAQATNGLIYITTYTLHGLQPASLYEVSVLARNSFG 419

  Fly   779 EGSPSE-----PSNVVELP 792
            ....|:     ....||||
  Fly   420 WSDNSKIVRFATGGEVELP 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653 17/76 (22%)
Ig 378..447 CDD:143165 17/73 (23%)
Ig 506..587 CDD:299845 25/95 (26%)
IG_like 506..587 CDD:214653 25/95 (26%)
I-set 592..682 CDD:254352 21/105 (20%)
Ig 595..682 CDD:299845 21/102 (21%)
FN3 686..789 CDD:238020 25/125 (20%)
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
wrapperNP_477404.1 Ig 41..124 CDD:299845 21/118 (18%)
IG_like 41..118 CDD:214653 19/112 (17%)
IG_like 145..218 CDD:214653 23/88 (26%)
Ig 147..219 CDD:299845 23/87 (26%)
I-set 224..323 CDD:254352 22/117 (19%)
IGc2 236..314 CDD:197706 19/96 (20%)
FN3 339..431 CDD:238020 18/92 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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