DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Dscam1

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:2279 Identity:503/2279 - (22%)
Similarity:812/2279 - (35%) Gaps:643/2279 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IEMPSQPKLASLLAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHPSS----SGSI 84
            :.||::.....:|...|.|..|.|........:..|          :.|.|...|::    |.|.
  Fly     1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQ----------KGPVFLKEPTNRIDFSNST 55

  Fly    85 VSEGSTKILQCHALGYPQPTYRWLK-DGVPVGD------FSSSQFYRFHSTRRED------AGSY 136
            .:|     ::|.|.|.|.|...|:: ||..|||      .||.....|...|.||      |..|
  Fly    56 GAE-----IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115

  Fly   137 QCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIF--DMPPIESIPVPSVMWQSED 199
            .|:|||..|||.|....|.......:|.... :..||.|:.||.  |:|...:..|..:.|.|::
  Fly   116 ACLARNQFGSIISRDVHVRAVVSQHYEEDIH-KAFVIRGNSAILKCDIPSFVADFVNVISWHSDE 179

  Fly   200 GP-----LNYDIKYAFTHANQLIILS-ADENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYIE 258
            ..     ..||.||....:.:|.|.. ..|:..|.|:.:..:...|:...||.....|..:|...
  Fly   180 KENFYPGTEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGS 244

  Fly   259 VAPEIIVRPQDVKV------KVGTGVVELQCIANARPLHELETLWLK--DGLAVETAGVRHTLND 315
            |:|::........:      |:|:  |.|.|.|.|.|:....  |.|  :|...:.|.|   |||
  Fly   245 VSPQLSGNGNQEHITLTRVPKMGS--VTLMCPAQAYPVPFFR--WYKFIEGTTRKQAVV---LND 302

  Fly   316 PWNR---TLALLQANSSHSGEYTCQVRLRSGG---YPAVSASARLQI-LEPPLFFTPMRAETFGE 373
            ...:   ||.:..|....||:|.|.|....||   ...::.:|.|.. ::||       .:|. :
  Fly   303 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP-------TQTV-D 359

  Fly   374 FGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINE 438
            ||.....||...|.|...|.|.::.:::.          :::..|.|:.:..:|..|:||...|:
  Fly   360 FGRPAVFTCQYTGNPIKTVSWMKDGKAIG----------HSEPVLRIESVKKEDKGMYQCFVRND 414

  Fly   439 AGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIME 503
            .....||..|:                           ||.               || ..|::.
  Fly   415 QESAEASAELK---------------------------LGG---------------RF-DPPVIR 436

  Fly   504 LPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILE----SGDLL----ISNI 560
            ...|..|...|....:.|.|.|:|.|.|:|..:..::.: :.|.|:.:    :||::    |:::
  Fly   437 QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN-NDRYQVGQYVTVNGDVVSYLNITSV 500

  Fly   561 RSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNID 625
            .:.|.|||.|:..::.|..:..|.|:|.....|.|.. ...::.|.|..:.|.|:.     |.||
  Fly   501 HANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQME-KKAIVAGETLIVTCPVAG-----YPID 559

  Fly   626 ---WYREGQSSTPISNSQRIGVQADGQLEIQAV-RASDVGSYACVVTSPGGNETRAA-RLSVIEL 685
               |.|:.: :.||:..|:  |..:|.|.|:.| |.||..:|.||..:..|...|.: .:.|:.|
  Fly   560 SIVWERDNR-ALPINRKQK--VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL 621

  Fly   686 PFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFI-IQRREVSELGPVPDPLLNWITELS-- 747
            |        :.:|...:..||:       |:| |..|. ||:.:    .|:.   ::|..|.|  
  Fly   622 P--------QIVPFAYEDLINM-------GDS-IDLFCQIQKGD----RPIK---VHWSFERSAG 663

  Fly   748 NVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSE 812
            :...||           ...|.|   .||:     ||.::::.:|..:|:               
  Fly   664 DYGFDQ-----------VQPQMR---TNRI-----SEKTSMISIPSASPA--------------- 694

  Fly   813 IITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITWKDYIVQIAAY 877
                       |                                         |.:|..:   |.
  Fly   695 -----------H-----------------------------------------TGRDTCI---AS 704

  Fly   878 NNMGVGVYTEGSKIKTKEGVPE---APPTNVKVEAINSTAARCRWTP-PNPQQINGINQGYKIQA 938
            |..|...|:    :.....||.   ..||:......:.....|:... |.||           ..
  Fly   705 NKAGTTTYS----VDLTVNVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQ-----------VT 754

  Fly   939 WQRRLID--GEWRDIER----RMKTVPPSLIDPLAEQTAILGGLEKFTE-YNISVLCFTDPGDGV 996
            |::.:.|  ||::|:::    |::           |.|..:..::|..| |   .||....|.|.
  Fly   755 WKKAVGDTPGEYKDLKKSDNIRVE-----------EGTLHVDNIQKTNEGY---YLCEAINGIGS 805

  Fly   997 ASSQVAVMTMDDVPD-------------EVTGLHFDDVSDRSVKVLW------APPRASNGILTG 1042
            ..|.|.::::...|:             |...|..:...::.:.:||      ..|:..|    .
  Fly   806 GLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPIGILWNMNNMRLDPKNDN----R 866

  Fly  1043 YTVRYQVKDRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVL 1107
            ||:|.::..          |...:.|::.:.:.:....|..||....||   ..|:|...|:.| 
  Fly   867 YTIREEILS----------TGVMSSLSIKRTERSDSALFTCVATNAFGS---DDASINMIVQEV- 917

  Fly  1108 PHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARNMTWFTICEINDPDAET-LTVTG 1171
            |..|.||.:.:....||.|.:...:||||.:.::.:|.:.:| .:|..|..:..|...| ..|..
  Fly   918 PEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFKRSR-ASWSEIDRVIVPGHTTEAQVQK 981

  Fly  1172 LVPFTQYRLRLSASNVVGSSKPSEATKDFQTIQARPKHPPFNVTVRAMSAQQLRVRWIPLQQTEW 1236
            |.|.|.|.:|:.|.|.:|:|:.|||. ...|.:..|...|.|:.|..::...:||.|.|..:|||
  Fly   982 LSPATTYNIRIVAENAIGTSQSSEAV-TIITAEEAPSGKPQNIKVEPVNQTTMRVTWKPPPRTEW 1045

  Fly  1237 YGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANSHVLDSLEEWTLYEVKMNACNDVGCSKES 1301
            .|...||.:.|| |..|..:..:...:.:.|:...::..|.:|..:|.|.|.:.|.|.:|....|
  Fly  1046 NGEILGYYVGYK-LSNTNSSYVFETINFITEEGKEHNLELQNLRVYTQYSVVIQAFNKIGAGPLS 1109

  Fly  1302 DTAVERTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKT 1366
            :...:.|.|..||..|.|......:|.|:.|.|...|.:..||.|..|||.||.:|.......:.
  Fly  1110 EEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKTYKVVYAPSDEWYDETKRH 1174

  Fly  1367 IPNNATFTTTLTELKKYVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMA 1431
            ....|:..|.|..||||..|.:||||.|..|:|..|. ||..||..|.|..|::|.    :|.|.
  Fly  1175 YKKTASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSV-PIHCQTEPDVPEAPTDVK----ALVMG 1234

  Fly  1432 R----IIWDVPVDPNGKILAYQVTYTLNGSAMLNYSREFPPSDRTFRATELLPGKYYSFSCTAQT 1492
            .    :.|..|..|||.|..|.|.....|:.....:::.|....:|.||||...|.|.|..||.|
  Fly  1235 NAAILVSWRPPAQPNGIITQYTVYSKAEGAETETKTQKVPHYQMSFEATELEKNKPYEFWVTAST 1299

  Fly  1493 RLGWGKIATALVYTTNNRERPQAPSVPQISRSQIQAHQITFSWTPGRDGFAPLRYYTVEMRENEG 1557
            .:|.|:               |:.|:..:...|:.|...:|..|           :|...:|:..
  Fly  1300 TIGEGQ---------------QSKSIVAMPSDQVPAKIASFDDT-----------FTATFKEDAK 1338

  Fly  1558 RWQPLPERVDPSLSSFTAVGL-RPYMTYQFR-IQ-ATNDLGPSAFSRESVIVRTLPAAPAVGVGG 1619
            .         |.|    |||. :|.:|::.: :: :.||.           :|.||.      |.
  Fly  1339 M---------PCL----AVGAPQPEITWKIKGVEFSANDR-----------MRVLPD------GS 1373

  Fly  1620 LKVVPITTTSVRVQWSALETALWNGDASTGGYRILYQQLSDFPTALQSTPKTDVHGINENSVVLS 1684
            |.:..:..                            |...|:          ..|.  |||:...
  Fly  1374 LLIKSVNR----------------------------QDAGDY----------SCHA--ENSIAKD 1398

  Fly  1685 DLQQDRNYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGE-------PRAVDAAPISSTEVRLLWK 1742
            .:    .::::||          .||.:.:|..:..|.:       |...|.||:.         
  Fly  1399 SI----THKLIVL----------APPQSPHVTLSATTTDALTVKLKPHEGDTAPLH--------- 1440

  Fly  1743 PPKQSMQNGDILGYKIYYLVTYSPQALEPGRKWEEEIEVVSATATSHSLVFLDKFTEYRIQLLAF 1807
                        ||.::|...:.        :|  |...||..:..|::..|...:.|::....|
  Fly  1441 ------------GYTLHYKPEFG--------EW--ETSEVSVDSQKHNIEGLLCGSRYQVYATGF 1483

  Fly  1808 NPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGYLVTYETTEENE 1872
            |..|.|..|..:..:|....|..|                 :.|:|:.                 
  Fly  1484 NNIGAGEASDILNTRTKGQKPKLP-----------------EKPRFIE----------------- 1514

  Fly  1873 KFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGPQDGSPVAPRDLILTK 1937
                                                     :|.|                    
  Fly  1515 -----------------------------------------VSSN-------------------- 1518

  Fly  1938 TLSSVEMHWINGPSGRGPILGYLIEAKKRDDSRWTKIEQTRKGMMQDFTVSYHILMPSTAYTFRV 2002
               ||.:|:.....|..|:..:::|:||||...|.:|....|   .|.......|.|:|.|..|:
  Fly  1519 ---SVSLHFKAWKDGGCPMSHFVVESKKRDQIEWNQISNNVK---PDNNYVVLDLEPATWYNLRI 1577

  Fly  2003 IAYNRYGISFPVYSKDSI------LTPSKLHLEYGYLQHK---PFYRQTW----FMVSLAATSIV 2054
            .|:|..|.:...|...::      :.|......:|.:..:   |.:...|    |||.|.|| :|
  Fly  1578 TAHNSAGFTVAEYDFATLTVTGGTIAPLDDGSGHGNVHTRIRLPAWMPEWLDLNFMVPLIAT-VV 1641

  Fly  2055 IIVMVIAVLCVK------------SKSYKYKQEAQKTLEESMAMSIDERQ-ELALEL------YR 2100
            ::.:.|.|:||.            .|...|.....:|:  ....::|:|: :|..||      .|
  Fly  1642 VVAVGICVVCVALSRRRADDMRGGQKDVYYDVVYNQTM--GPGATLDKRRPDLRDELGYIAPPNR 1704

  Fly  2101 SRHGVGTGTLNSVGTLRSGTLGTLGRKSTSRPPPGVHLG---KSPPRPSPASVAYHSDEESLKCY 2162
            ....|.....|:...::.|..|.....||..|....:|.   |:||.|...:...|: ..:.:|:
  Fly  1705 KLPPVPGSNYNTCDRIKRGRGGLRSNHSTWDPRRNPNLYEELKAPPVPMHGNHYGHA-HGNAECH 1768

  Fly  2163 DENP 2166
            ..:|
  Fly  1769 YRHP 1772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 34/102 (33%)
I-set 72..150 CDD:254352 32/94 (34%)
Ig 172..245 CDD:299845 20/80 (25%)
IG_like 280..356 CDD:214653 25/83 (30%)
Ig 280..343 CDD:299845 21/67 (31%)
IG_like 375..450 CDD:214653 17/74 (23%)
Ig 378..447 CDD:143165 15/68 (22%)
Ig 506..587 CDD:299845 23/88 (26%)
IG_like 506..587 CDD:214653 23/88 (26%)
I-set 592..682 CDD:254352 27/94 (29%)
Ig 595..682 CDD:299845 26/91 (29%)
FN3 686..789 CDD:238020 22/105 (21%)
FN3 798..893 CDD:238020 7/94 (7%)
FN3 901..1005 CDD:238020 23/111 (21%)
fn3 1011..1094 CDD:278470 16/101 (16%)
FN3 1108..1202 CDD:238020 30/94 (32%)
FN3 1210..1308 CDD:238020 27/97 (28%)
fn3 1317..1402 CDD:278470 31/84 (37%)
FN3 1415..1507 CDD:238020 28/95 (29%)
FN3 1513..1608 CDD:238020 17/97 (18%)
fn3 1617..1708 CDD:278470 10/90 (11%)
FN3 1722..1823 CDD:238020 19/107 (18%)
FN3 1828..1920 CDD:238020 6/91 (7%)
FN3 1927..2016 CDD:238020 22/88 (25%)
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 33/96 (34%)
IG 57..133 CDD:214652 28/80 (35%)
IG_like 267..343 CDD:214653 25/82 (30%)
Ig 269..340 CDD:143165 24/75 (32%)
IG_like 353..425 CDD:214653 20/89 (22%)
IGc2 361..413 CDD:197706 13/61 (21%)
I-set 433..527 CDD:254352 24/94 (26%)
IGc2 446..517 CDD:197706 18/71 (25%)
I-set 533..618 CDD:254352 27/93 (29%)
IGc2 544..607 CDD:197706 23/70 (33%)
Ig 641..714 CDD:143165 24/172 (14%)
IGc2 735..804 CDD:197706 18/93 (19%)
I-set 819..914 CDD:254352 19/111 (17%)
Ig 833..921 CDD:299845 21/105 (20%)
FN3 918..1011 CDD:238020 30/94 (32%)
FN3 1018..1116 CDD:238020 27/98 (28%)
FN3 1124..1217 CDD:238020 34/93 (37%)
FN3 1222..1312 CDD:238020 30/108 (28%)
Ig 1339..1406 CDD:299845 20/140 (14%)
FN3 1409..1499 CDD:238020 23/120 (19%)
FN3 1504..1584 CDD:238020 27/180 (15%)
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I8189
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.810

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