DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and DIP-eta

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001188701.2 Gene:DIP-eta / 33793 FlyBaseID:FBgn0031725 Length:450 Species:Drosophila melanogaster


Alignment Length:415 Identity:95/415 - (22%)
Similarity:150/415 - (36%) Gaps:119/415 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   324 LQANSSHSGEYTCQ-------VRLRSGGYP-AVSASARLQILEPPLFFTPMRAETFGEFGGQVQL 380
            :|:|.....:.||.       :.:....|| .|...|  :::..|.|.:|:...| ...|....|
  Fly     1 MQSNFCQCRKQTCALSVILLLILMSQQCYPQRVEVPA--EVIVDPKFSSPIVNMT-APVGRDAFL 62

  Fly   381 TCDVVGEPTP-QVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSA 444
            || ||.:..| :|.|.|    ||.     :..|...|.::.|.         |.:.|   ..:..
  Fly    63 TC-VVQDLGPYKVAWLR----VDT-----QTILTIQNHVITKN---------QRIGI---ANSEH 105

  Fly   445 STWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKG------------SESGSSDRRKEFRFA 497
            .||..        |:|.:.:              |:||            |:.|..|        
  Fly   106 KTWTM--------RIKDIKE--------------SDKGWYMCQINTDPMKSQMGYLD-------- 140

  Fly   498 SAPIMELPPQ--------NVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISS--RVQILES 552
                :.:||.        ::...:|.:.|:.|.|.|||.|.|||.......:::::  .|..:|.
  Fly   141 ----VVVPPDILDYPTSTDMVVREGSNVTLKCAATGSPEPTITWRRESGVPIELATGEEVMSIEG 201

  Fly   553 GDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQ--PPVDTT------VLLGLTAT 609
            .||:|.|:|....|.|:|:.:|....       ||..|..::.  ||:.|.      .:.|...|
  Fly   202 TDLVIPNVRRHHMGAYLCIASNGVPP-------SVSKRITLVVHFPPMITVQNQLIGAVEGKGVT 259

  Fly   610 LQCKVSSDP-SVPYNIDWYREGQSSTPISNSQRIGVQADG------QLEIQAVRASDVGSYACVV 667
            |.|:..:.| |:.|   |.||.....|........|...|      :|.|..:..::.|||.||.
  Fly   260 LDCESEAYPKSINY---WTRERGEIVPPGGKYSANVTEIGGYRNSMRLHINPLTQAEFGSYRCVA 321

  Fly   668 TSPGGNETRAARLSVIELPFPPSNV 692
            .:..|:.....:|..|    ||:.|
  Fly   322 KNSLGDTDGTIKLYRI----PPNAV 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653 8/39 (21%)
Ig 280..343 CDD:299845 4/25 (16%)
IG_like 375..450 CDD:214653 19/75 (25%)
Ig 378..447 CDD:143165 16/69 (23%)
Ig 506..587 CDD:299845 23/90 (26%)
IG_like 506..587 CDD:214653 23/90 (26%)
I-set 592..682 CDD:254352 25/104 (24%)
Ig 595..682 CDD:299845 25/101 (25%)
FN3 686..789 CDD:238020 3/7 (43%)
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
DIP-etaNP_001188701.2 Ig 51..141 CDD:299845 28/146 (19%)
IG_like 51..137 CDD:214653 26/130 (20%)
IG_like 153..237 CDD:214653 25/90 (28%)
Ig 161..224 CDD:299845 21/62 (34%)
IG_like 252..335 CDD:214653 21/85 (25%)
Ig 258..333 CDD:143165 20/77 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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