DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Nrcam

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_006516011.1 Gene:Nrcam / 319504 MGIID:104750 Length:1308 Species:Mus musculus


Alignment Length:1257 Identity:303/1257 - (24%)
Similarity:503/1257 - (40%) Gaps:212/1257 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 MPSQPKL-ASLLAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGS 89
            ||.:..| |..:.:::.||...|......|..|  .:.:||      |...|..|....|:....
Mouse     6 MPKKKHLSAGGVPLILFLCQMISALDVPLDPKL--LHDLVQ------PPTITQQSPKDYIIDPRE 62

  Fly    90 TKILQCHALGYPQPTYRWLKDG----------VPVGDFSSSQFYRFHSTRREDA--GSYQCIARN 142
            ..::||.|.|.|.|::.|.::|          |.:...|.:......|..:.:.  |.|||.|||
Mouse    63 NIVIQCEAKGKPPPSFSWTRNGTHFDIDKDPLVTMKPGSGTLVINIMSEGKAETYEGVYQCTARN 127

  Fly   143 DAGSIFSEKSDVVVAYMGIFENTTEGRLTVI---SGHPAIFDMPPIESIPVPSVMW--------- 195
            :.|:..|....|..:...::   |:.||..|   :|...:....|...:|...:.|         
Mouse   128 ERGAAVSNNIVVRPSRSPLW---TKERLEPIVLQNGQSLVLPCRPPIGLPPAIIFWMDNSFQRLP 189

  Fly   196 QSE------DGPLNYD-----------IKYA-FTHAN--------QLIILSADE---------ND 225
            |||      :|.|.:.           |.|| |.|..        .|.::|.||         :|
Mouse   190 QSERVSQGLNGDLYFSNVLPEDTREDYICYARFNHTQTIQQKQPISLKVISVDELNDTIAANLSD 254

  Fly   226 RKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIANARPL 290
            .:.|.||:     .||....|            :.||   ..:..|.::...|:.|:|||...|.
Mouse   255 TEFYGAKS-----SKERPPTF------------LTPE---GNESHKEELRGNVLSLECIAEGLPT 299

  Fly   291 HELETLWLK-DGLAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQVRLRSGG-YPAVSASAR 353
            ..:  .|:| ||:    .....|....:.:||.:...:.:.||.|.|..:...|. :..:|.:.:
Mouse   300 PII--YWIKEDGM----LPANRTFYRNFKKTLQITHVSEADSGNYQCIAKNALGAVHHTISVTVK 358

  Fly   354 LQ---ILEPP-LFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNT 414
            ..   |:.|. |..:|      ||.|   .|.|...|.|.|::.|..|...::..::.....::.
Mouse   359 AAPYWIVAPQNLVLSP------GENG---TLICRANGNPKPRISWLTNGVPIEIALDDPSRKIDG 414

  Fly   415 DNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQ-PRILRVRASHAGLG 478
            | |::...:....:|::||.|.|:.|...|:.::.|           ||: ||||          
Mouse   415 D-TIIFSNVQESSSAVYQCNASNKYGYLLANAFVNV-----------LAEPPRIL---------- 457

  Fly   479 SEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDI 543
                              .||..:      ...:..:.|.:.|...|||.|.|.| :..|:...:
Mouse   458 ------------------TSANTL------YQVIANRPALLDCAFFGSPMPTIEW-FKGTKGSAL 497

  Fly   544 SSRVQIL-ESGDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLT 607
            ...:.:| ::|.|.|...:....|.|.||..|:.|..|.|.:|.:...|:||:.|....|..|..
Mouse   498 HEDIYVLHDNGTLEIPVAQKDSTGTYTCVARNKLGMAKNEVHLEIKDPTRIIKQPEYAVVQRGSK 562

  Fly   608 ATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGG 672
            .:.:|:|..|.::...|.|.::   :..:.|.:|.....| .|.:..|:..|.|:|.|...:...
Mouse   563 VSFECRVKHDHTLIPTIMWLKD---NGELPNDERFSTDKD-HLVVSDVKDDDGGTYTCTANTTLD 623

  Fly   673 NETRAARLSVI----------ELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRR 727
            :.:.:|.|.|:          ::|.||.:::   |.....:|:.::||||.|.||||:||||:..
Mouse   624 SASASAVLRVVAPTPTPAPIYDVPNPPFDLE---LTNQLDKSVQLTWTPGDDNNSPITKFIIEYE 685

  Fly   728 EVSELGPVPDPLLNWITELSNVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELP 792
            :.     :.|..| | ...:.||..|....|: |.....|.|||.|.|.:|...|||.|......
Mouse   686 DA-----MHDAGL-W-RHQAEVSGTQTTAQLK-LSPYVNYSFRVMAENSIGRSMPSEASEQYLTK 742

  Fly   793 QEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQR 857
            ...|...|:...|.......::..|:|......||..|.|.:.:|....:: .|:...:.|.:: 
Mouse   743 AAEPDQNPMAVEGLGTEPDNLVITWKPLNGFQSNGPGLQYKVSWRQKDGDD-EWTSVVVANVSK- 805

  Fly   858 NFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPP 922
             :::....|:..|::::.|.|::|...........:.|.:|...|.||:|..:|||.|...|.|.
Mouse   806 -YIVSGTPTFVPYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEVHWDPV 869

  Fly   923 NPQQINGINQGYKIQAWQRRLID-GEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISV 986
            .|:.:.|..|||:|..|:.:... ...|.||:::.|...:      :...:|.||:.::.|.::|
Mouse   870 PPKSVRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGT------KTHGMLPGLQPYSHYALNV 928

  Fly   987 LCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKD 1051
            ......|:|.||:.....|.:.||...:.|...:.:..|:.:.|.||...|||||.|.::||..:
Mouse   929 RVVNGKGEGPASTDRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILQYQPIN 993

  Fly  1052 RP---DTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKT----ATI-QSGVEPVLP 1108
            ..   ..|....:.|:.|..|:..|..:|.|.|...|.|.||.|...|    .|: ::|:.|...
Mouse   994 STHELGPLVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGPGSQITEEAITTVDEAGIPPPDV 1058

  Fly  1109 HAPTALA----LSNIEAFS--VVLQFTPGFDGNSSITKWKVEGQTARNMTWFTICEINDPDAETL 1167
            .|....|    :||:.|.:  .....|..::|...:|.:...|.......|..  ||.:......
Mouse  1059 GAGKVRAVNPRISNLTATAAETYANITWEYEGPGHVTFYVEYGVAGSKEEWRK--EIVNGSRSFF 1121

  Fly  1168 TVTGLVPFTQYRLRLSASNVVG 1189
            .:.||:|.|.|::|:.|....|
Mouse  1122 GLKGLMPGTAYKVRVGAEGDSG 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 20/81 (25%)
Ig 280..344 CDD:409353 16/64 (25%)
Ig strand B 280..283 CDD:409353 1/2 (50%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 2/3 (67%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 21/91 (23%)
Ig strand B 378..382 CDD:409353 1/3 (33%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 1/3 (33%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 22/85 (26%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 1/3 (33%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 1/2 (50%)
Ig 592..682 CDD:472250 21/89 (24%)
Ig strand B 608..612 CDD:409353 0/3 (0%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 1/3 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 37/102 (36%)
FN3 798..893 CDD:238020 16/94 (17%)
FN3 901..1005 CDD:238020 30/104 (29%)
FN3 <960..>1261 CDD:442628 62/244 (25%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
NrcamXP_006516011.1 IgI_NrCAM 46..140 CDD:409458 23/93 (25%)
Ig strand A 46..50 CDD:409458 0/3 (0%)
Ig strand A' 55..59 CDD:409458 1/3 (33%)
Ig strand B 64..71 CDD:409458 2/6 (33%)
Ig strand C 77..82 CDD:409458 1/4 (25%)
Ig strand C' 85..87 CDD:409458 0/1 (0%)
Ig strand D 94..97 CDD:409458 1/2 (50%)
Ig strand E 102..106 CDD:409458 0/3 (0%)
Ig strand F 119..127 CDD:409458 5/7 (71%)
Ig strand G 130..140 CDD:409458 2/9 (22%)
Ig 149..238 CDD:472250 18/88 (20%)
Ig strand B 163..167 CDD:409353 0/3 (0%)
Ig strand C 177..181 CDD:409353 0/3 (0%)
Ig strand E 200..204 CDD:409353 2/3 (67%)
Ig strand F 215..220 CDD:409353 1/4 (25%)
Ig strand G 231..234 CDD:409353 0/2 (0%)
Ig 277..358 CDD:472250 20/86 (23%)
Ig strand B 288..292 CDD:409353 1/3 (33%)
Ig strand C 301..305 CDD:409353 0/5 (0%)
Ig strand E 323..327 CDD:409353 2/3 (67%)
Ig strand F 337..342 CDD:409353 2/4 (50%)
Ig strand G 350..353 CDD:409353 0/2 (0%)
Ig 362..450 CDD:472250 24/108 (22%)
Ig strand B 378..382 CDD:409353 2/6 (33%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 415..419 CDD:409353 2/4 (50%)
Ig strand F 429..434 CDD:409353 2/4 (50%)
Ig strand G 442..445 CDD:409353 1/2 (50%)
Ig 456..542 CDD:472250 26/120 (22%)
Ig strand B 472..476 CDD:409353 1/3 (33%)
Ig strand C 485..489 CDD:409353 2/4 (50%)
Ig strand E 508..512 CDD:409353 2/3 (67%)
Ig strand F 522..527 CDD:409353 2/4 (50%)
Ig strand G 535..538 CDD:409353 1/2 (50%)
Ig 547..633 CDD:472250 21/89 (24%)
Ig strand B 563..567 CDD:409353 0/3 (0%)
Ig strand C 578..582 CDD:409353 1/3 (33%)
Ig strand E 600..603 CDD:409353 1/2 (50%)
Ig strand F 613..618 CDD:409353 2/4 (50%)
Ig strand G 626..629 CDD:409353 0/2 (0%)
FN3 647..737 CDD:238020 36/100 (36%)
fn3 750..832 CDD:394996 16/84 (19%)
fn3 848..940 CDD:394996 28/97 (29%)
FN3 <916..>1147 CDD:442628 61/230 (27%)
fn3 953..1037 CDD:394996 25/83 (30%)
Bravo_FIGEY 1191..1284 CDD:464016
Blue background indicates that the domain is not in the aligned region.

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