DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and Dscaml1

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001101611.1 Gene:Dscaml1 / 315615 RGDID:1304887 Length:2111 Species:Rattus norvegicus


Alignment Length:1868 Identity:418/1868 - (22%)
Similarity:659/1868 - (35%) Gaps:529/1868 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 GSTKILQCHALGYPQPTYRWLKDG---VPVGDFS----SSQFYRFHSTRREDAGSYQCIARNDAG 145
            |||.||.|...|.|:.|.||.::.   :|....|    |::.....|.::..:|:|||.|...|.
  Rat   387 GSTVILSCALTGSPEFTIRWYRNTELVLPGEAISIRGLSNETLLISSAQKSHSGAYQCFATRKAQ 451

  Fly   146 ------------------SIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPS 192
                              |.||||                    |::.......|...:..|.|:
  Rat   452 TAQDFAIIVLEDGTPRIVSSFSEK--------------------VVNPGEQFSLMCAAKGAPPPT 496

  Fly   193 VMWQSEDGPLNYDIKY-----------AFTHANQLIILSADENDRKGYRAKAINTQLGKEESSAF 246
            |.|..:|.|:..|..:           ..:|.|   :......|...||..|.|: :|..|..| 
  Rat   497 VTWALDDEPVVRDGSHRTNQYTMSDGTTISHMN---VTGPQIRDGGVYRCTARNS-VGSAEYQA- 556

  Fly   247 VHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIANAR----PLHELETLWLKDGLAVETA 307
             .:||.|.|.|.....|            |.|.....:.|.|    |.:.::  |.||.|.:.. 
  Rat   557 -RINVRGPPSIRAMRNI------------TAVAGRDTLINCRVIGYPYYSIK--WYKDALLLPD- 605

  Fly   308 GVRHTLNDPWNRTLALLQANSS-HSGEYTCQVRLRSGGYP--AVSASARLQILEPPLF----FTP 365
            ..|..:.:  |.||.|...... ..|||.|.|.::    |  ::|.|..:.:..|||.    |.|
  Rat   606 NHRQVVFE--NGTLKLTDVQKGMDEGEYLCSVLIQ----PQLSISQSVHVAVKVPPLIQPFEFPP 664

  Fly   366 MRAETFGEFGGQVQLTCDVVGEPTP-QVKWFRNAESV----DAHIESGRYTLNTDNTLVIKKLIL 425
                  ...|..:.:.|.|.....| ::.|.::.:.:    ...|||..:.    ::|.|..:.|
  Rat   665 ------ASIGQLLYIPCVVSSGDMPIRITWRKDGQVIISGSGVTIESKEFM----SSLQISSVSL 719

  Fly   426 DDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDR 490
            .....:.|:|     .|:|:|               :::.|.|.||.                  
  Rat   720 KHNGNYTCIA-----SNAAAT---------------VSRERQLIVRV------------------ 746

  Fly   491 RKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIY-----NETQL--VDISSRVQ 548
                    .|...:.|.|...:.||...::|...|.|.|.:.|.:     |..|.  |.::.|:|
  Rat   747 --------PPRFVVQPNNQDGIYGKAGVLNCSVDGYPPPKVMWKHAKGSGNPQQYHPVPLTGRIQ 803

  Fly   549 ILESGDLLISNIRSVDAGLYICVRANEAGS-VKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQC 612
            ||.:..|||.::...|.|.|:|..:|..|: :....:|:|.:...|...|..|..:.|....|.|
  Rat   804 ILPNSSLLIRHVLEEDIGYYLCQASNGVGTDISKAMFLTVKIPAMITSHPNTTIAIKGHAKELNC 868

  Fly   613 KVSSDPSVPYNIDWYREGQSSTPISNSQRI----------GVQADGQLEIQAVRASDVGSYACVV 667
            ....:.  |..|.|    :....:.:..|:          |.:....|:::.....|...::|..
  Rat   869 TARGER--PIIIRW----EKGDTVIDPDRVMRYAIATKDNGDEVVSTLKLKPADRGDSVFFSCHA 927

  Fly   668 TSPGGNETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSEL 732
            .:..|.:....:|:|.|.|.||   ::| :.|.:.||:|:.||..|||||.|:.|.|:.:..|: 
  Rat   928 INSYGEDRGLIQLTVQEPPDPP---ELE-IREVKARSMNLRWTQRFDGNSIITGFDIEYKNKSD- 987

  Fly   733 GPVPDPLLNWITELS--NVSADQRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQE- 794
                    :|..:.|  |:|.......:.:|..|:||..|:.:.|::|.   ||||..:.:..| 
  Rat   988 --------SWDFKQSTRNISPTINQANIVDLHPASVYSIRMYSFNKIGR---SEPSKELTISTEE 1041

  Fly   795 -APSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWS---YQNITNEA 855
             ||.|||:.......:...|...|:.|.:|.:||.|.||.:.||    .|.|.|   |..:..:|
  Rat  1042 AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGIIRGYQIGYR----ENSPGSNGQYSIVEMKA 1102

  Fly   856 QRN---FLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARC 917
            ..:   :.:..|..:..|.|.:.|:|..|.|..:......|.|.||..||.||:..:|.|..|..
  Rat  1103 TGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLEDVPSQPPENVRALSITSDVAVI 1167

  Fly   918 RWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEY 982
            .|:.|....:||:.:||::..|. ..:||||.:::....|          .:...|.|:||||.|
  Rat  1168 SWSEPPRSTLNGVLKGYRVIFWS-LYVDGEWGEMQNVTTT----------RERVELRGMEKFTNY 1221

  Fly   983 NISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTV-- 1045
            ::.||.:|..||||.||.:.:.|.:|||....|:.....|..||.|.|.||...||::..||:  
  Rat  1222 SVQVLAYTQAGDGVRSSVLYIQTKEDVPGPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKYTIFC 1286

  Fly  1046 -----------RYQVKDR------------------------------------------PDTLK 1057
                       .|:....                                          |..:.
  Rat  1287 SSPGSGQPAPSEYETSPEQLFYRIAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPAKII 1351

  Fly  1058 SFNLTA-----DDTELTVNQLQATTHYWFEIVAWTR--VGSGIPK-------------------- 1095
            ||..|.     .|..|..|.:....    ..|.||:  ..|.||.                    
  Rat  1352 SFGGTVTTPWLKDVRLPCNSVGDPA----PAVKWTKDSEDSAIPVSLDGHRLIHTNGTLLLRAVK 1412

  Fly  1096 ---------TATIQSGVEPVL--------PHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKV 1143
                     |||...|.:.::        |..| .|.:|...|.|:.|.:.||.:|.|||..:.:
  Rat  1413 AEDSGYYTCTATNTGGFDTIIVNLLVQVPPDQP-RLTVSKTSASSITLTWIPGDNGGSSIRGFVL 1476

  Fly  1144 EGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSEATKDFQTIQARP- 1207
            :.....:..|..:  .......:..:..|...|.|:::|:|.|.|||.:.||      .|:|:. 
  Rat  1477 QYSVDNSEEWKDV--FISSSERSFKLDSLKCGTWYKVKLAAKNSVGSGRISE------IIEAKTH 1533

  Fly  1208 -KHPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSV-VIEDHT 1270
             :.|.|:      ..|.|   :..:..|....|.:|:|.....:  |...::|.|:.. ..:...
  Rat  1534 GREPSFS------KDQHL---FTHINSTHARLNLQGWNNGGCPI--TAIVLEYRPKGTWAWQGVR 1587

  Fly  1271 ANSHV---LDSLEEWTLYEVKMNACNDVGCSKES------------------------------- 1301
            |||..   |..|.|.|.||::|.|||..||..|:                               
  Rat  1588 ANSSTEVFLTELREATWYELRMRACNSAGCGNETAQFATLDYDGSTIPPIKSAQGEGDDVKKLFT 1652

  Fly  1302 -----------------------DTAVERTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRN 1343
                                   :..::|.|:| .|...:.:..|..|..|.|....:.||.|  
  Rat  1653 IGCPVILATLGVALLFVVRKKRKEKRLKRLRDA-KSLAEMLISKNNRSFDTPVKGPPQGPRLH-- 1714

  Fly  1344 GQIDGYKVFYAAADRGQQVLHKTIPNNATFTTTLTELKKYV----------VYHVQVLAYTRLGN 1398
              ||..:|.....|:  :.:.:...:.||...|..|..:.|          ::|..::.      
  Rat  1715 --IDIPRVQLLIEDK--EGIKQLGDDKATIPVTDAEFSQAVNPQSFCTGVSLHHPALIQ------ 1769

  Fly  1399 GALSTPPIRVQTFEDTPGVPSNVSFPDV--------------------SLTMARII---WDVPVD 1440
               ||.|: :...:..||. :.||..:|                    :.|.||.:   |.....
  Rat  1770 ---STGPL-IDMSDIRPGT-NPVSRKNVKSAHSTRNRYSSQWTLTKCQASTPARTLTSDWRTVGS 1829

  Fly  1441 PNGKILAYQVTYTLNGSAMLNYSREFPPSDRTFRATELLPGKYYSFS-----CTAQTRLGWGKIA 1500
            .:|      ||.|.:.|...:.|::......:..:||.....|...:     ...:.:|...|..
  Rat  1830 QHG------VTVTESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEQLQHAKFE 1888

  Fly  1501 TALVY---------TTNNRERPQA------PSVPQISRSQIQAHQITFSWTP--------GRDGF 1542
            ....:         ||...|...:      ||.|.|.|         |:.:|        |::..
  Rat  1889 ITECFISDSSSDQMTTGTNENADSMTSMSTPSEPGICR---------FTASPPKPQDADRGKNVA 1944

  Fly  1543 APLRY------------YTVE---MRENEGRWQPLPERVDP---SLSSFTAVGLRPYMTYQFRI- 1588
            .|:.:            ||..   .|:.:|| :|.|. |.|   |:.:.|    |.|.|....: 
  Rat  1945 VPIPHRANKSDYCNLPLYTKSEAFFRKADGR-EPCPV-VPPREASMRNLT----RAYHTQARHLT 2003

  Fly  1589 --QATNDLG-PSAFSRESVIVRTLP----AAPAVGVGGLKVVPITTTS 1629
              .|:..|| |...:..:....|||    |.||...|.....|..|.|
  Rat  2004 LDPASKPLGLPHPGATAATATATLPQRTLAMPAPPAGTAPPAPGPTPS 2051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 26/93 (28%)
I-set 72..150 CDD:254352 23/86 (27%)
Ig 172..245 CDD:299845 18/83 (22%)
IG_like 280..356 CDD:214653 20/82 (24%)
Ig 280..343 CDD:299845 17/67 (25%)
IG_like 375..450 CDD:214653 16/79 (20%)
Ig 378..447 CDD:143165 14/73 (19%)
Ig 506..587 CDD:299845 26/88 (30%)
IG_like 506..587 CDD:214653 26/88 (30%)
I-set 592..682 CDD:254352 16/99 (16%)
Ig 595..682 CDD:299845 15/96 (16%)
FN3 686..789 CDD:238020 34/104 (33%)
FN3 798..893 CDD:238020 26/100 (26%)
FN3 901..1005 CDD:238020 35/103 (34%)
fn3 1011..1094 CDD:278470 24/144 (17%)
FN3 1108..1202 CDD:238020 25/93 (27%)
FN3 1210..1308 CDD:238020 27/155 (17%)
fn3 1317..1402 CDD:278470 17/94 (18%)
FN3 1415..1507 CDD:238020 20/128 (16%)
FN3 1513..1608 CDD:238020 27/130 (21%)
fn3 1617..1708 CDD:278470 4/13 (31%)
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Dscaml1NP_001101611.1 IG 101..173 CDD:214652
IGc2 101..168 CDD:197706
Ig 183..276 CDD:299845
IG_like 195..276 CDD:214653
I-set 291..369 CDD:254352
IGc2 298..359 CDD:197706
IGc2 386..447 CDD:197706 19/59 (32%)
I-set 466..560 CDD:254352 24/119 (20%)
Ig 466..556 CDD:299845 23/113 (20%)
IGc2 577..635 CDD:197706 16/62 (26%)
IG_like 665..744 CDD:214653 18/102 (18%)
Ig 673..739 CDD:143165 15/89 (17%)
I-set 748..843 CDD:254352 27/94 (29%)
Ig7_DSCAM 765..843 CDD:143211 22/77 (29%)
I-set 849..942 CDD:254352 16/98 (16%)
Ig 861..949 CDD:299845 16/93 (17%)
FN3 945..1039 CDD:238020 34/109 (31%)
FN3 1046..1143 CDD:238020 26/100 (26%)
fn3 1151..1237 CDD:278470 33/96 (34%)
FN3 1249..1340 CDD:238020 14/90 (16%)
IGc2 1364..1428 CDD:197706 12/67 (18%)
FN3 1442..1532 CDD:238020 27/98 (28%)
FN3 1546..1618 CDD:238020 21/73 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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