DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Cntn6

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_037357.1 Gene:Cntn6 / 27256 RGDID:62008 Length:1028 Species:Rattus norvegicus


Alignment Length:1140 Identity:296/1140 - (25%)
Similarity:451/1140 - (39%) Gaps:239/1140 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 NSIVQQQQLQAPRFTTHPSS-------SGSIVSEGSTKILQCHALGYPQPTYRWLKDGVPVGDFS 118
            ||...:.:...|.|...|..       |.|.:      ||.|.|.|||.|.|||.::|..: |||
  Rat    15 NSCAGESRFTRPIFIQEPQDVIFPLDLSRSEI------ILSCTASGYPSPHYRWKQNGTDI-DFS 72

  Fly   119 SSQFYRFH------STRR--EDAGSYQCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISG 175
            .:..||..      |:.|  :|.|.|||:|.|..|:|.|.|:.:..||:..||..:...::|..|
  Rat    73 MTYHYRLDGGSLAISSPRTDQDIGIYQCLATNPVGTILSRKAKLQFAYIEDFETKSRSTVSVREG 137

  Fly   176 HPAIFDMPPIESIPVPSVMWQSEDGPLN-YDIKYAFTHAN--QLIILSADENDRKGYRAKAINTQ 237
            ...:....|.......|..|...|.||. .:.|..|...|  .|.|...:.:|...|.....|.:
  Rat   138 QGVVLLCGPPPHFGELSYDWTFNDNPLYVQEDKRRFVSQNTGNLYIAKVEPSDVGNYTCFVTNKE 202

  Fly   238 LGKEESSAFVHLNVSG----------------DPYIEVA-PEIIVRPQDVKVKVGTGVVELQCIA 285
                     .|.:|.|                :|.|||. ||.|...:|..||       |:|.|
  Rat   203 ---------AHRSVQGPPTPLVQRTDGVMGEYEPKIEVRFPETIQAAKDSSVK-------LECFA 251

  Fly   286 NARPLHELETLWLK-DGLAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTC---QVRLRSGGYP 346
            ...|:.::.  |.: ||..: ...|:::.:   ..||.:.:......|.|.|   .:|.|:    
  Rat   252 LGNPVPDIS--WRRLDGSPM-PGKVKYSNS---QATLEIPKFQQEDEGFYECVAGNLRGRN---- 306

  Fly   347 AVSASARLQILEPPLFFTPMRAETFGEFGGQVQLT-----------CDVVGEPTPQVKWFRNAES 400
              .|..:|....||            |:..::|.|           |...|.|.|...|.:|.|.
  Rat   307 --LAKGQLIFYAPP------------EWEQKIQNTYLSIYDSLFWECKASGNPNPSYTWLKNGER 357

  Fly   401 VDAHIESGRYTLNTDN-TLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKT---AKNRVKR 461
            ::.     ...:.|:| ||:|..|.:.|:.::||.|.|:.....|:..|||....   :||.:|:
  Rat   358 LNT-----EERIQTENGTLIITMLNVSDSGIYQCAAENKYQTIYANAELRVLASAPDFSKNPIKK 417

  Fly   462 LAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGS 526
            ::..::                                              |.|.:|.|:....
  Rat   418 ISVVQV----------------------------------------------GGDISIECKPNAF 436

  Fly   527 PNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRT 591
            |..:|:| ...|:.:..|.||..||.|.|.|.|:...|||.|.||..|:.|:.|....|.|..||
  Rat   437 PKASISW-KRGTENLKQSKRVFFLEDGSLKICNVTRSDAGSYTCVATNQFGNGKSSGSLIVKERT 500

  Fly   592 QIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREG---QSSTPISNSQRIGVQADGQLEIQ 653
            .|..||....|.:|.:..|.|:||.||::.....||..|   .....:::.:|||.::.|.|.|:
  Rat   501 VITVPPSKMDVTVGESIVLPCQVSHDPTMEVLFVWYFNGDVIDLKKGVAHFERIGGESVGDLMIR 565

  Fly   654 AVRASDVGSYACVVTSPGGNETRAARLSVIE------LPFPPSNVKVERLPEPQQRSINVSWTPG 712
            .::....|.|.|.|      :|...|||.:.      .|.||.:||||.:   ...:..:||.||
  Rat   566 NIQLGHSGKYLCTV------QTTLERLSAVADIIVRGPPGPPEDVKVEHI---SSTTSQLSWRPG 621

  Fly   713 FDGNSPISKFIIQRREVSELG-----PVPDPLLNWITELSNVSADQRWILLENLKAATVYQFRVS 772
            .|.||||..|.||.|....:|     .||: :||..|..:.|.....|:         .|:|||.
  Rat   622 PDNNSPIQIFTIQTRTPFSVGWQAVATVPE-ILNGQTYNATVIGLSPWV---------EYEFRVV 676

  Fly   773 AVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYR 837
            |.|.:|.|.||:||.::......|:..||...|...|.||::..|:|..||.:||:..|||:.:|
  Rat   677 AGNNIGIGEPSKPSELLRTKASIPNVAPVNINGGGGSRSELVITWEPIPEELQNGEGFGYIIMFR 741

  Fly   838 LFGYNNVPWSYQNITNEAQRNFLI--QELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEA 900
            ..|  :..|..:.:.......|:.  :.::....:.|::..|||.|.|..:..|.:.:.|..|..
  Rat   742 PVG--STTWMKEKVALVESSKFIYRNESIMPLSPFEVKVGVYNNEGEGSLSTVSIVYSGEDEPRL 804

  Fly   901 PPTNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQR---RLIDGE---WRDIERRMKTVP 959
            .|....|::.:::.....|        |.|       ||.|   |::..|   |.|..:.     
  Rat   805 APRGTSVQSFSASDMEVSW--------NAI-------AWNRNTGRVLGYEVLYWTDNSKE----- 849

  Fly   960 PSLIDPLAEQ----TAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDD 1020
             |:|..:...    |..:.||...|.|..||..:...|.|.:|..|.|.|....|.:........
  Rat   850 -SMIGKIRVSGNVTTKNITGLRANTIYFASVRAYNTAGTGPSSPPVNVTTKKSPPSQPPANIAWK 913

  Fly  1021 VSDRSVKVLWAPPRA--SNGILTGYTVRYQVKDRPDT--LKSFNLTADDTELTVNQLQATTHYWF 1081
            :|:..:.:.|...:.  :...:.||.:.|:...:..|  |::.|.:|   ||.|   .....|..
  Rat   914 LSNSKLCLNWEHVKTMENESEVLGYKILYRQNRQSKTHVLETNNTSA---ELLV---PFEEDYLI 972

  Fly  1082 EIVAWTRVGSG-------IPKTATIQS-GVEPVLP 1108
            ||...:..|.|       |||.:::.| ||:.:.|
  Rat   973 EIRTVSDGGDGSSSEEIRIPKMSSLSSVGVQILKP 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 30/84 (36%)
Ig 280..344 CDD:409353 15/67 (22%)
Ig strand B 280..283 CDD:409353 1/2 (50%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 2/3 (67%)
Ig strand F 333..338 CDD:409353 2/7 (29%)
Ig 360..451 CDD:472250 25/102 (25%)
Ig strand B 378..382 CDD:409353 2/14 (14%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 3/4 (75%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 27/84 (32%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 1/3 (33%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 1/2 (50%)
Ig 592..682 CDD:472250 27/92 (29%)
Ig strand B 608..612 CDD:409353 1/3 (33%)
Ig strand C 623..627 CDD:409353 0/3 (0%)
Ig strand E 648..652 CDD:409353 2/3 (67%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 1/2 (50%)
FN3 686..789 CDD:238020 40/107 (37%)
FN3 798..893 CDD:238020 26/96 (27%)
FN3 901..1005 CDD:238020 26/113 (23%)
FN3 <960..>1261 CDD:442628 40/165 (24%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
Cntn6NP_037357.1 Ig 26..120 CDD:472250 35/100 (35%)
Ig strand B 46..50 CDD:409353 2/9 (22%)
Ig strand C 59..63 CDD:409353 2/3 (67%)
Ig strand E 82..86 CDD:409353 0/3 (0%)
Ig strand F 97..102 CDD:409353 3/4 (75%)
Ig strand G 111..114 CDD:409353 1/2 (50%)
Ig 129..214 CDD:472250 19/93 (20%)
Ig strand B 140..144 CDD:409353 0/3 (0%)
Ig strand C 154..158 CDD:409353 1/3 (33%)
Ig strand E 179..183 CDD:409353 1/3 (33%)
Ig strand F 193..198 CDD:409353 1/4 (25%)
Ig strand G 209..212 CDD:409353 1/2 (50%)
Ig 227..315 CDD:472250 27/106 (25%)
Ig strand B 245..249 CDD:409353 3/10 (30%)
Ig strand C 258..262 CDD:409353 0/5 (0%)
Ig strand E 280..284 CDD:409353 2/3 (67%)
Ig strand F 294..299 CDD:409353 2/4 (50%)
Ig strand G 307..310 CDD:409353 1/2 (50%)
Ig 319..403 CDD:472250 23/88 (26%)
Ig strand B 335..339 CDD:143205 0/3 (0%)
Ig strand C 348..352 CDD:143205 0/3 (0%)
Ig strand E 369..373 CDD:143205 2/3 (67%)
Ig strand F 383..388 CDD:143205 2/4 (50%)
Ig strand G 396..399 CDD:143205 1/2 (50%)
Ig5_Contactin 408..496 CDD:409358 30/134 (22%)
Ig strand A 408..413 CDD:409358 0/4 (0%)
Ig strand A' 416..421 CDD:409358 1/4 (25%)
Ig strand B 425..432 CDD:409358 2/6 (33%)
Ig strand C 440..444 CDD:409358 2/4 (50%)
Ig strand D 458..461 CDD:409358 1/2 (50%)
Ig strand E 462..467 CDD:409358 2/4 (50%)
Ig strand F 475..483 CDD:409358 4/7 (57%)
Ig strand G 489..496 CDD:409358 2/6 (33%)
Ig 500..598 CDD:472250 29/103 (28%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 532..536 CDD:409353 0/3 (0%)
Ig strand E 560..564 CDD:409353 2/3 (67%)
Ig strand F 574..579 CDD:409353 2/4 (50%)
Ig strand G 587..590 CDD:409353 1/2 (50%)
FN3 598..691 CDD:238020 39/105 (37%)
FN3 <620..>912 CDD:442628 88/324 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 887..908 6/20 (30%)
FN3 903..983 CDD:214495 17/85 (20%)
Blue background indicates that the domain is not in the aligned region.

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