DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Ncam1

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_006243048.1 Gene:Ncam1 / 24586 RGDID:67378 Length:1135 Species:Rattus norvegicus


Alignment Length:1409 Identity:278/1409 - (19%)
Similarity:458/1409 - (32%) Gaps:421/1409 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 SSGSIVSEGSTKILQCHALG-YPQPTYRWLKDGVPVGDFSS--------------SQFYRFHSTR 129
            |.|.| |.|.:|...|...| .......|..   |.|:..|              |.....::..
  Rat    27 SQGEI-SVGESKFFLCQVAGDAKDKDISWFS---PNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 87

  Fly   130 REDAGSYQCIARNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVM 194
            .:|||.|:|:...:.|:......:|.:....:|:|....: ....|..|:.....:.|:| |:::
  Rat    88 IDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQ-EFKEGEDAVIVCDVVSSLP-PTII 150

  Fly   195 W--QSEDGPLNYDIKYAFTHANQLIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYI 257
            |  :..|..|..|:::.....|.|.|....:.|...||.:.                        
  Rat   151 WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG------------------------ 191

  Fly   258 EVAPEIIVRPQDVKVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTLA 322
                .|:.| .::..|      ::|.|.|..|                                 
  Rat   192 ----RILAR-GEINFK------DIQVIVNVPP--------------------------------- 212

  Fly   323 LLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGE 387
            .:||..|                 .|:|:|.|                    |..|.|.||..|.
  Rat   213 TVQARQS-----------------IVNATANL--------------------GQSVTLVCDADGF 240

  Fly   388 PTPQVKWFRNAESVDAHIESGRYTLNTDNT--LVIKKLILDDAAMFQCLAINEAGENSASTWLRV 450
            |.|.:.|.::.|.::...|.....:.:|::  |.|:.:..:|.|.:.|:|.|:|||..||..|:|
  Rat   241 PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 305

  Fly   451 KTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALD-G 514
                       .|:|:|..|                                    :|.||:: .
  Rat   306 -----------FAKPKITYV------------------------------------ENQTAMELE 323

  Fly   515 KDATISCRAVGSPNPNITWIYNETQLVDISS-------RVQILESGD-------------LLISN 559
            :..|::|.|.|.|.|:|||   .|...:|||       |.:..|:.|             |.:.:
  Rat   324 EQVTLTCEASGDPIPSITW---RTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKS 385

  Fly   560 IRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNI 624
            |:..|||.|||..:|..|......||.|....: :|.||......|....:.|:|.:.||.  .|
  Rat   386 IQYTDAGEYICTASNTIGQDSQSMYLEVQYAPK-LQGPVAVYTWEGNQVNITCEVFAYPSA--TI 447

  Fly   625 DWYREGQ--SSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPF 687
            .|:|:||  .|:..||.:.....:...||:.....:|.|:|.|...:..|.|:....|...:.|.
  Rat   448 SWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPS 512

  Fly   688 PPSNVKVERLPEPQQRSINVSW-TPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSA 751
            .||   ::|: ||...:..|.: .|...|..||.|:..:.:.:.|..        |         
  Rat   513 SPS---IDRV-EPYSSTAQVQFDEPEATGGVPILKYKAEWKSLGEEA--------W--------- 556

  Fly   752 DQRW-----------ILLENLKAATVYQFRVSAVNRVGEGSPSEPSN-----VVELPQEAPSGP- 799
            ..:|           :.:..||..|.|..|::|:|..|.|..|..:.     |...|...||.| 
  Rat   557 HSKWYDAKEANMEGIVTIMGLKPETRYAVRLAALNGKGLGEISAATEFKTQPVHSPPPREPSAPK 621

  Fly   800 ---PVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLI 861
               .:|..|::..::.|       .::.....|..|:::||....:.  |..:........:.::
  Rat   622 LEGQMGEDGNSIKVNLI-------KQDDGGSPIRHYLVKYRAKLASE--WKPEIRLPSGSDHVML 677

  Fly   862 QELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGV--PEAPPTNVKVEAINSTAARCRWTPPNP 924
            :.|....:|.|.:.|.|..|        |.|....|  ..|.||.:               |.|.
  Rat   678 KSLDWNAEYEVYVVAENQQG--------KSKAAHFVFRTSAQPTAI---------------PANG 719

  Fly   925 QQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNIS---- 985
            ....|::.|                           :::..|.....:|..:...|.|.::    
  Rat   720 SPTAGLSTG---------------------------AIVGILIVIFVLLLVVMDITCYFLNKCGL 757

  Fly   986 VLCFT-----DPGDGVASSQV----AVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILT 1041
            ::|..     ..|.|.....:    |..:.|:..:.:..:..::  :|:       |....|   
  Rat   758 LMCIAVNLCGKAGPGAKGKDMEEGKAAFSKDESKEPIVEVRTEE--ERT-------PNHDGG--- 810

  Fly  1042 GYTVRYQVKDRPDTLKSFNLTADDTELTVNQLQATTHYW------FEIVAWTRVGSGIPKTATIQ 1100
                ::...:....|....|.||.|....:.|.:.|...      .|..| |...|...:|.|:.
  Rat   811 ----KHTEPNETTPLTEPELPADTTATVEDMLPSVTTVTTNSDTITETFA-TAQNSPTSETTTLT 870

  Fly  1101 SGVEPVLPHAPTALALSNIEAFSVVL-QFTPGFDGNSSITKWKVEGQTARNMTWFTICEINDPDA 1164
            |.:.|.....|        |:.||.. |.||.            :|.||.:         :.|.|
  Rat   871 SSIAPPATTVP--------ESNSVPAGQATPS------------KGVTASS---------SSPPA 906

  Fly  1165 ETLTVTGLVPFTQYRLRLSASN------------VVGSSKPSEATKDFQTIQARPKHPPFNVTVR 1217
            ....|..||..:.......::|            |:..|.|:.| .:...:.|..|..|......
  Rat   907 SVPKVAPLVDLSDTPTSAPSANNLSSTVLANQGAVLSPSTPASA-GETSKVPATSKPSPTPTPTP 970

  Fly  1218 AMSAQQLRVRWIPL----QQTEWYGNPRGYNISYKQLVKTPGTIK---------YVPRSVVIEDH 1269
            |.:|..|.....|.    |..:...:.:|.:....|    |||:|         ..|:|......
  Rat   971 AGAASPLAAVAAPATEAPQAKQEAPSTKGLDPEPTQ----PGTVKNPTEAATAPASPKSKAPSVS 1031

  Fly  1270 TANSHVLDSLEEWTLYEVKMNACN----DVGCSKESDTAVERTREAVPSYGPLDVQANATSSTTV 1330
            |.|....:.|        ||:..|    |:..:|:...|:.....|..:.|.....|.:|:.:.|
  Rat  1032 TTNPSQGEDL--------KMDEGNFKTPDIDLAKDVFAALGSPAPATGASGQASELAPSTADSAV 1088

  Fly  1331 VVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNATFT 1374
                ...|.:...|.::.......:..:......||:||.||.|
  Rat  1089 ----PPAPAKTEKGPVETKSEPQESEAKPAPTEVKTVPNEATQT 1128

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 18/76 (24%)
Ig 280..344 CDD:409353 7/63 (11%)
Ig strand B 280..283 CDD:409353 0/2 (0%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 0/3 (0%)
Ig strand F 333..338 CDD:409353 0/4 (0%)
Ig 360..451 CDD:472250 25/92 (27%)
Ig strand B 378..382 CDD:409353 2/3 (67%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 1/5 (20%)
Ig strand F 430..435 CDD:409353 1/4 (25%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 31/105 (30%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 2/3 (67%)
Ig strand E 554..557 CDD:409353 2/15 (13%)
Ig strand F 567..572 CDD:409353 3/4 (75%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 25/91 (27%)
Ig strand B 608..612 CDD:409353 0/3 (0%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 1/3 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 25/119 (21%)
FN3 798..893 CDD:238020 16/98 (16%)
FN3 901..1005 CDD:238020 14/116 (12%)
FN3 <960..>1261 CDD:442628 61/345 (18%)
fn3 1317..1402 CDD:394996 12/58 (21%)
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
Ncam1XP_006243048.1 IgI_1_NCAM-1 20..116 CDD:409451 20/92 (22%)
Ig strand A 20..25 CDD:409451
Ig strand A' 28..32 CDD:409451 2/4 (50%)
Ig strand B 34..44 CDD:409451 3/9 (33%)
Ig strand C 50..56 CDD:409451 1/5 (20%)
Ig strand C' 59..61 CDD:409451 1/1 (100%)
Ig strand D 69..75 CDD:409451 0/5 (0%)
Ig strand E 77..85 CDD:409451 1/7 (14%)
Ig strand F 92..100 CDD:409451 3/7 (43%)
Ig strand G 104..115 CDD:409451 1/10 (10%)
IG_like 124..190 CDD:214653 15/67 (22%)
Ig strand B 135..139 CDD:409353 1/3 (33%)
Ig strand C 148..152 CDD:409353 0/3 (0%)
Ig strand E 172..176 CDD:409353 2/3 (67%)
Ig strand F 186..191 CDD:409353 2/4 (50%)
IgI_3_NCAM-1 211..308 CDD:143207 34/177 (19%)
Ig strand A 211..216 CDD:143207 1/37 (3%)
Ig strand A' 220..226 CDD:143207 2/5 (40%)
Ig strand B 229..239 CDD:143207 4/9 (44%)
Ig strand C 243..249 CDD:143207 2/5 (40%)
Ig strand C' 251..253 CDD:143207 0/1 (0%)
Ig strand D 263..266 CDD:143207 0/2 (0%)
Ig strand E 271..277 CDD:143207 2/5 (40%)
Ig strand F 283..292 CDD:143207 3/8 (38%)
Ig strand G 295..307 CDD:143207 6/22 (27%)
IgI_NCAM-1 307..413 CDD:143277 35/144 (24%)
Ig strand A 307..312 CDD:143277 2/4 (50%)
Ig strand A' 316..320 CDD:143277 2/3 (67%)
Ig strand B 325..333 CDD:143277 2/7 (29%)
Ig strand C 339..345 CDD:143277 3/8 (38%)
Ig strand C' 348..351 CDD:143277 1/2 (50%)
Ig strand D 369..375 CDD:143277 0/5 (0%)
Ig strand E 378..384 CDD:143277 1/5 (20%)
Ig strand F 392..400 CDD:143277 4/7 (57%)
Ig strand G 403..413 CDD:143277 3/9 (33%)
IG_like 422..500 CDD:214653 22/79 (28%)
Ig strand B 433..437 CDD:409353 0/3 (0%)
Ig strand C 446..450 CDD:409353 1/3 (33%)
Ig strand E 473..477 CDD:409353 1/3 (33%)
Ig strand F 487..492 CDD:409353 2/4 (50%)
FN3 509..606 CDD:238020 25/117 (21%)
fn3 618..700 CDD:394996 17/98 (17%)
Herpes_BLLF1 <841..1132 CDD:282904 68/335 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.