DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Ptprq

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:1687 Identity:369/1687 - (21%)
Similarity:606/1687 - (35%) Gaps:422/1687 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   637 SNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLPEPQ 701
            |.||   |...|..: ..|....:.|.:....|...:.|.|..:|   .|.||..:..||:   .
Mouse    15 SESQ---VDVSGSFD-DTVYDITLSSISATTYSSPVSRTLATNVS---KPGPPVFLAGERV---G 69

  Fly   702 QRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWI-TELSNVSA--DQRWILLENLKA 763
            ...|.:||....:.|..|..::::.:||..          |: |..:.|.|  |...:||.||..
Mouse    70 SAGILLSWNTPPNPNGRIISYVVKYKEVCP----------WMQTAYTRVRAKPDSLEVLLTNLNP 124

  Fly   764 ATVYQFRVSAVNRVGEG----------SPSEPSNVVELPQEA---------------PSGPPVGF 803
            .|.|:.:|:|.|..|.|          :.|.|..||.|..||               |:|....|
Mouse   125 GTTYEIKVAAENSAGIGVFSDPFLFQTAESAPGKVVNLTVEALNYSAVNLIWYLPRQPNGKITSF 189

  Fly   804 ---VGSARS----------MSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEA 855
               |..|||          :.::::...|...|:.:..:...............|....:::|..
Mouse   190 KISVKHARSGIVVKDVSIKVEDLLSGKLPECNENSDSFLWSTTSPSPTLSRATPPLRTTHLSNTL 254

  Fly   856 QRN-----------FLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEA 909
            .||           |::..|..:..|:.:::|...  ...|.:.:.::|.|.|||.||.|.....
Mouse   255 ARNKISSVWKEPISFVVTHLRPYTTYLFEVSAVTT--EAGYIDSTIVRTPESVPEGPPQNCITGN 317

  Fly   910 INSTAARCRWTPPNPQQINGINQG---YKIQAW--QRRLIDGEWRDIERRMKTVPPSLIDPLAEQ 969
            :...|....|.||      .|..|   |:::.:  ..|::|...:|:.                 
Mouse   318 VTGKAFSISWDPP------AIVTGKFSYRVELYGPTGRILDNSTKDLR----------------- 359

  Fly   970 TAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPR 1034
             .:...|..||.|::.|...|..|.| ..|.::|.|..|||..|..|...:|....::|.|..||
Mouse   360 -FVFTHLTPFTMYDVYVAAETSAGVG-PKSNLSVFTPPDVPGAVFDLQIVEVEATEIRVSWRKPR 422

  Fly  1035 ASNGILTGYTVRYQVKD---------------------RPD-----------------------T 1055
            ..|||::.|.|:..|.:                     .|:                       :
Mouse   423 QPNGIISQYRVKVSVLESGVILENTLLTGQDEYINNPMTPEIMNLVDPMIGFYEGSGEMSSDLHS 487

  Fly  1056 LKSF--------------------------------NLTADDTELTVNQLQATTHYWFEIVAWTR 1088
            |.||                                ::.|:.....:.:|...|.:...:.|:|.
Mouse   488 LASFIYNSHPHDFPARTRVEDQRSPVVVATRNQYMTDIAAEHLSYVIRRLVPFTEHTISVSAFTV 552

  Fly  1089 VGSGIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARNMTW 1153
            :|.|.|...|:::..:  :|.:...:...||.:.|::|.:.|....|..||.:.:..........
Mouse   553 MGEGPPTVLTVRTREQ--VPSSIQIINYKNISSSSILLYWDPPEYPNGKITHYTIYAMELDTNRA 615

  Fly  1154 FTICEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSEATKDF-QTIQARPKHPPFNVTVR 1217
            |.:..:::    :..:|||..:|:|::|::||..||.|..||....| :|.:..|:..|.:|.|.
Mouse   616 FQMTTVDN----SFLITGLKKYTRYKMRVAASTHVGESSLSEENDLFVRTPEDEPESSPQDVKVT 676

  Fly  1218 AMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANSHV-LDSLEE 1281
            .:|..:|.:.|.|.::      |.|..|:|:        :.|.....:...:|:.::: |..|:.
Mouse   677 DVSPSELSLTWSPPEK------PNGIIIAYE--------VFYQNADALFVKNTSTTNITLSDLKP 727

  Fly  1282 WTLYEVKMNACNDVGCSKESDTAVE-RTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNGQ 1345
            :|||.:.:.:...:|...:|.:.:. ||.|.||...|.::.....||..:.:.:  :|.:..||.
Mouse   728 YTLYNISIQSYTRLGHGNQSSSLLSVRTSETVPDSAPENITYKNISSEEIEIFF--LPPRSPNGI 790

  Fly  1346 IDGYKVFYAAADRGQQVLHKTIPNNATFTTTLTELKKYVVYHVQVLAYTRLGNGALSTPPIRVQT 1410
            |..|.::...::..:.   :|| ...:.|.|:..||||..|.::|.|.|..|.|..|. ||.:.|
Mouse   791 IQKYTIYLKRSNSHEA---RTI-ETTSLTLTIGGLKKYTHYVIEVSASTLKGEGVRSM-PISILT 850

  Fly  1411 FEDTP-GVPSNVSFPDVSLTMARIIWDVPVDPNGKILAYQV-------TYTLNGSAMLNYSREFP 1467
            .||.| ..|.|.|...:|.....:.|..|::|||.||.|.|       ..|:|.:.:   |.|. 
Mouse   851 EEDAPDSPPQNFSVKQLSGVTVMLSWQPPLEPNGIILYYTVYVWDKVSLKTINATEV---SLEL- 911

  Fly  1468 PSDRTFRATELLPGKYYSFSCTAQTRLGWGKIATALVYTTNNRERPQAPSVP--QISRSQIQAHQ 1530
             ||..:.|.       ||...||.||.|.||..::::   |.|.....||.|  .:....:.:..
Mouse   912 -SDLDYHAD-------YSAYVTASTRFGDGKTRSSVI---NFRTPEGEPSDPPKDVHYVNLSSSS 965

  Fly  1531 ITFSWTPGRDGFAPLRYYTVEMRENEGRWQPLPERVDPSLSSFT-----------AVGLRPYMT- 1583
            |...|||.......::||:|..:.....:          :.:||           .|..|.|.. 
Mouse   966 IILFWTPPVKPNGIIQYYSVYYQNTSSTF----------VQNFTLLEVTQEPGNVTVSARIYKLA 1020

  Fly  1584 ----YQFRIQATNDLGPSAFSRESVIVRTLPAAPAVGVGGLKVVPITTTSVRVQWSALETALWNG 1644
                |.|.:.|:..:|....|.:.:.|.|....|..|||.|....:::|::.|.|:.        
Mouse  1021 VFSYYTFWLTASTLVGNGNKSSDVIHVYTDQDIPEGGVGNLTYESLSSTAINVSWTP-------- 1077

  Fly  1645 DASTGGYRILYQQLS--DFPTALQSTPKTDVHGINENSVVLSDLQQDRNYEIVVLPFNSQGPGPA 1707
            .:...|....|..|:  ..|...:..|.|..    |||:...:|::..:|...:.|...:|....
Mouse  1078 PSQPNGLVFYYVSLNLQQSPPRHRRPPLTTY----ENSIYFDNLEKYTDYIFKITPSTEKGFSET 1138

  Fly  1708 -TPPAAVYVGEAVPTGEPRAVDAAPISSTEVRLLWKPPKQSMQNGDILGYKI------------- 1758
             |....:...|.||...|.......:|||.:.|.|.||.:  .||.||.|.:             
Mouse  1139 YTAQLHIKTEEDVPDTPPIINTFKNLSSTSILLSWDPPLK--PNGAILSYHLTLQGTHANRTFVT 1201

  Fly  1759 ----------------------------------------------------------YYLVTYS 1765
                                                                      :..:|:|
Mouse  1202 SGNHIVLEELSPFTLYSFLAAARTMKGLGPSSILFFYTDESAPLAPPQNLTLINYTSDFVWLTWS 1266

  Fly  1766 PQALEPG-------RKWEEEIEVV-----SATATSHSLVFLDKFTEYRIQLLAFNPAGDGPR-SA 1817
            |..|..|       :..|.|.:.|     |...|...|..|:..:.|.|.:.||...|:|.: |.
Mouse  1267 PSPLPGGIVKVYSFKIHEHETDTVFYKNISGFQTDAKLAGLEPVSTYSISVSAFTKVGNGNQFSN 1331

  Fly  1818 PITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGYLVTYETTEENEKFSKQVKQKV 1882
            .:...|...||.|..::.......||:.|.||||:..||.|:.|::|.|        ....|...
Mouse  1332 VVKFTTQESVPDAVQNIACVARDWQSVSVMWDPPRKANGIIIHYMITVE--------GNSTKVSP 1388

  Fly  1883 SNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGPQDGSPVAPRDLILTKTLS-SVEMHW 1946
            .:.......|....:|.|.|||.||...|.....||:|.|:. .|..|.:...:...| ||.:.|
Mouse  1389 RDPMYTFTKLLANTSYIFEVRASTSAGEGNESQCNVSTLPET-VPSVPTNTAFSNVQSTSVTLRW 1452

  Fly  1947 INGPSGRGPILGYLIEAKKRDDSR------W-----------------TKIEQTRKGMMQDFTVS 1988
            |...:    ||||....|.....|      |                 .:.|.|.:|:.:.....
Mouse  1453 IKPDT----ILGYFQNYKITTQLRAQKCREWEPEECVEHQEVQYLYEANQTEDTVRGLKKFQWYR 1513

  Fly  1989 YHILMPSTA----------------------YTFRVIAYNRYGISFPVYSKDSILTPSKLHL 2028
            :.:...:.|                      ...||:|.:.:||:.. :::.:|:|....:|
Mouse  1514 FQVAASTNAGYGNASSWISTQTLPGPPDGPPENVRVVATSPFGINIS-WNEPAIITGPTFYL 1574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653
Ig 378..447 CDD:143165
Ig 506..587 CDD:299845
IG_like 506..587 CDD:214653
I-set 592..682 CDD:254352 10/44 (23%)
Ig 595..682 CDD:299845 10/44 (23%)
FN3 686..789 CDD:238020 30/115 (26%)
FN3 798..893 CDD:238020 17/118 (14%)
FN3 901..1005 CDD:238020 23/108 (21%)
fn3 1011..1094 CDD:278470 24/158 (15%)
FN3 1108..1202 CDD:238020 24/94 (26%)
FN3 1210..1308 CDD:238020 20/99 (20%)
fn3 1317..1402 CDD:278470 22/84 (26%)
FN3 1415..1507 CDD:238020 30/99 (30%)
FN3 1513..1608 CDD:238020 21/112 (19%)
fn3 1617..1708 CDD:278470 19/93 (20%)
FN3 1722..1823 CDD:238020 32/184 (17%)
FN3 1828..1920 CDD:238020 27/91 (30%)
FN3 1927..2016 CDD:238020 23/134 (17%)
PtprqNP_001357916.1 FN3 57..151 CDD:238020 28/106 (26%)
FN3 308..393 CDD:238020 23/109 (21%)
fn3 399..>441 CDD:365830 13/41 (32%)
FN3 570..654 CDD:238020 22/87 (25%)
fn3 668..744 CDD:365830 19/89 (21%)
FN3 762..850 CDD:238020 25/94 (27%)
fn3 857..934 CDD:365830 27/88 (31%)
FN3 951..1049 CDD:238020 19/107 (18%)
FN3 1056..1137 CDD:238020 20/92 (22%)
FN3 1152..1233 CDD:238020 14/82 (17%)
FN3 1247..1337 CDD:238020 19/89 (21%)
FN3 1342..1421 CDD:238020 25/86 (29%)
FN3 1432..1535 CDD:238020 18/106 (17%)
FN3 1542..1638 CDD:238020 8/34 (24%)
FN3 1645..1734 CDD:238020
UP_III_II 1759..1928 CDD:297589
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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