DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and zig-3

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_509336.1 Gene:zig-3 / 192088 WormBaseID:WBGene00006980 Length:251 Species:Caenorhabditis elegans


Alignment Length:279 Identity:68/279 - (24%)
Similarity:110/279 - (39%) Gaps:58/279 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 LALLQANSSHSGEYTCQVR--LRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCD 383
            ||.:.|:...|||....|.  :|......::....|:|:|      .:...|... |..|.|.||
 Worm     9 LAAISAHPLSSGEMRAAVSNLVREIDSTHLTTKPSLKIIE------GLEDNTVST-GESVTLRCD 66

  Fly   384 VVGEPTPQVKWFRNAESV--DAHIESGRYTLNTDNTLVIKKLI----------LDDAAMFQCLAI 436
            |:..||..:.|.::.:.:  |..:......||.....|...:|          |.....::|:|.
 Worm    67 VLSTPTGVIYWEKDGQRIQGDKELNVFEKVLNAMGPTVESGIITSSYQIPCANLHHIGSYKCVAT 131

  Fly   437 NEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPI 501
            |......:|..:.|:.:|.|.:                             |.||      |||:
 Worm   132 NGHDTVESSAKISVEGQTVKCK-----------------------------STRR------SAPV 161

  Fly   502 MELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAG 566
            :.:..::...|....||:.|||....|.|  |::.:.::...|.|.::|.||||||..|:..|.|
 Worm   162 ITMSTESRFELQDNAATLICRADRRANWN--WMFEDKKIDFDSGRYELLPSGDLLIRKIQWSDMG 224

  Fly   567 LYICVRANEAGSVKGEAYL 585
            .|.|:..|:.|..:||.:|
 Worm   225 SYFCIAHNKYGESRGETFL 243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653 9/36 (25%)
Ig 280..343 CDD:299845 8/23 (35%)
IG_like 375..450 CDD:214653 19/86 (22%)
Ig 378..447 CDD:143165 18/80 (23%)
Ig 506..587 CDD:299845 28/80 (35%)
IG_like 506..587 CDD:214653 28/80 (35%)
I-set 592..682 CDD:254352
Ig 595..682 CDD:299845
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
zig-3NP_509336.1 I-set 45..145 CDD:254352 22/106 (21%)
Ig 61..142 CDD:143165 18/80 (23%)
IG_like 177..244 CDD:214653 27/69 (39%)
Ig <191..237 CDD:299845 17/45 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.