DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and igcm-2

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001362087.1 Gene:igcm-2 / 180913 WormBaseID:WBGene00020130 Length:802 Species:Caenorhabditis elegans


Alignment Length:930 Identity:179/930 - (19%)
Similarity:280/930 - (30%) Gaps:343/930 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 YRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIANARPLHEL 293
            |.||.|..|....|..|:  ...:|.|                       :.|.|..:.......
 Worm     6 YAAKFIRRQTDDGEMKAY--WGKAGAP-----------------------ITLPCSISLFNEESF 45

  Fly   294 ETLWLKDGLAV------ETAGVRHTLNDPWNRT----LALLQANSSHSGEYTCQVR--LRSGGYP 346
            ...|.|||..:      |...|..||.....|.    :.:.......:|.|.|.|.  .:....|
 Worm    46 SLDWRKDGQLILSAFGQEQGHVTPTLQGRLARDGFLGITIHSVTDGDAGVYQCIVTKFSKQPTRP 110

  Fly   347 AVSASARLQILEPPLFFTPMR-AETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRY 410
            ....||:|.:..||:..:|.: |....:.|..:...|...|.|:|::.|.||.:           
 Worm   111 EKGLSAKLVVNVPPVIISPSKNAIIHKKVGADLIFECKAEGAPSPEITWSRNEQ----------- 164

  Fly   411 TLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHA 475
            .::|...|.:..|...|..::.|||:|..|.:::|.                             
 Worm   165 IISTSPVLTLSNLEEGDKGLYTCLAVNIEGNSTSSI----------------------------- 200

  Fly   476 GLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNP-NITWIYN--- 536
                             :.||..|.|::|.|.|.|.::|.:....|.|...... :.:|::.   
 Worm   201 -----------------DVRFTKATILDLIPLNKTVIEGSNVFWHCHANAQATAISYSWLFEKKP 248

  Fly   537 -ETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAG-SVKGEAYLSVLVRTQII--QPP 597
             :|..:.:.|.::   ||||.:.::|..|:|.|.|...|.|| :....|||.|....:.:  ..|
 Worm   249 IKTTSLGLRSNIR---SGDLSLQDVRKSDSGWYTCEAKNSAGETTSSTAYLHVFYPPEPLSSHQP 310

  Fly   598 VDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRASDVGS 662
            |. ||..|...|:.|.|.::|: |.:..|.:         |...:..||...:.|...:..|.|.
 Worm   311 VQ-TVASGRNTTVSCDVIANPT-PTSYTWSK---------NGHYLPTQASSHIIISYAKPGDGGI 364

  Fly   663 YACVVTSPGGN----ETRAARLSVIELPF----PPSNVKVE------------------------ 695
            |.|...:..|.    ||   .|.|.|.|.    |||.:||.                        
 Worm   365 YGCQADNIAGKGSIVET---HLIVAEPPVFTVAPPSEIKVRLGDQVSIPCQGFGDPMPIVYWIRD 426

  Fly   696 -----------------------------------------RLPEPQ-----------QRSINVS 708
                                                     .:.:||           ..|:.:|
 Worm   427 KKRINQSTLTFKKVEHLDHGAYECVVANSVETISTRVMLLVEITKPQMASSIKFTCLNSSSMRIS 491

  Fly   709 WTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSADQRWILLENLKAATVYQFRVSA 773
            ||||::|... ..|.:..:.        |..|.|    :::.......:|::|:....|:..:.:
 Worm   492 WTPGYNGGFD-QTFAVHAQN--------DVTLQW----TSIKTSLNETILDHLEPFVSYRVSIES 543

  Fly   774 VNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRL 838
            ||  .:||.:..:.                  :.||.:.:          |...::.       .
 Worm   544 VN--AKGSTNSTTY------------------NRRSCTSL----------HAPDKLY-------F 571

  Fly   839 FGYNNVPW-------SYQ-NITNEAQRNF--LIQELITWKDYIVQIAAYNNMGVGVYTEGSKI-- 891
            .|||.:.|       ||: ....|..:||  |.:.|.|          |..:|..|......|  
 Worm   572 CGYNELCWTAAEGASSYRIESRTEPSKNFQPLAEVLET----------YYRLGKDVDETKQTIFR 626

  Fly   892 --KTKEGVPEAPPTNV--------------------------------------KVEAINSTAAR 916
              .|:...|.:.|:|.                                      |.:......:|
 Worm   627 VRSTRPSYPPSEPSNALRYGIADNVDLPIFMLAAVFGLLFCFACGLFAWRCFHNKNKKSKRRKSR 691

  Fly   917 CRWTPPNPQQING-INQGYKIQAWQ-----------RRLIDGEW---RDIERRMKTVPPSL---- 962
            ...||....|..| ...|....:.|           |.|.|.||   ||:|......||||    
 Worm   692 SNSTPSKTYQDYGRFTYGDGSSSSQPGTETYYEPSLRLLDDHEWRGPRDLEPVAVRYPPSLAELD 756

  Fly   963 --------IDPLAEQTAILG 974
                    ||.:.....|||
 Worm   757 YDIGEDHPIDDMFRDRYILG 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845 6/15 (40%)
IG_like 280..356 CDD:214653 19/87 (22%)
Ig 280..343 CDD:299845 15/74 (20%)
IG_like 375..450 CDD:214653 18/74 (24%)
Ig 378..447 CDD:143165 17/68 (25%)
Ig 506..587 CDD:299845 24/86 (28%)
IG_like 506..587 CDD:214653 24/86 (28%)
I-set 592..682 CDD:254352 23/95 (24%)
Ig 595..682 CDD:299845 23/90 (26%)
FN3 686..789 CDD:238020 26/182 (14%)
FN3 798..893 CDD:238020 19/108 (18%)
FN3 901..1005 CDD:238020 27/139 (19%)
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
igcm-2NP_001362087.1 IG_like 23..101 CDD:214653 16/102 (16%)
Ig 124..200 CDD:386229 20/86 (23%)
IG_like 214..298 CDD:214653 24/86 (28%)
Ig_3 309..371 CDD:372822 19/72 (26%)
Ig 389..467 CDD:386229 6/77 (8%)
FN3 476..548 CDD:238020 16/86 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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