DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and sax-3

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001024990.1 Gene:sax-3 / 180637 WormBaseID:WBGene00004729 Length:1273 Species:Caenorhabditis elegans


Alignment Length:1563 Identity:326/1563 - (20%)
Similarity:506/1563 - (32%) Gaps:554/1563 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 SLLAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTKILQCHAL 98
            :||..::|:.......||...:||             ||....||..  .:||.||...|.|.| 
 Worm     6 TLLCTILLVLQAVIRSFCEDASNL-------------APVIIEHPID--VVVSRGSPATLNCGA- 54

  Fly    99 GYPQPT---YRWLKDGVP-------------VGDFSSSQFYRFHSTRR---EDAGSYQCIARNDA 144
               :|:   ..|.|||.|             |.|..|....:.:|.:.   .|||:|.|:|.|:.
 Worm    55 ---KPSTAKITWYKDGQPVITNKEQVNSHRIVLDTGSLFLLKVNSGKNGKDSDAGAYYCVASNEH 116

  Fly   145 GSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVMWQSEDGPLNYDIKYA 209
            |.:.|.:..:.:|.:..........:..:.|..|:.:..|....|.|.|.|:.:|          
 Worm   117 GEVKSNEGSLKLAMLREDFRVRPRTVQALGGEMAVLECSPPRGFPEPVVSWRKDD---------- 171

  Fly   210 FTHANQLIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKV 274
                                          ||                       :|.||:.   
 Worm   172 ------------------------------KE-----------------------LRIQDMP--- 180

  Fly   275 GTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTLALLQANSSHSGEYTCQVR 339
                                               |:||:...|  |.:...:.|.||.|.|...
 Worm   181 -----------------------------------RYTLHSDGN--LIIDPVDRSDSGTYQCVAN 208

  Fly   340 LRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAH 404
            ...|  ..||..|||.:.|.|.|....:..|. :.|..|...|.|.|:|.||:.|.|..|.:.. 
 Worm   209 NMVG--ERVSNPARLSVFEKPKFEQEPKDMTV-DVGAAVLFDCRVTGDPQPQITWKRKNEPMPV- 269

  Fly   405 IESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILR 469
              :..|....:..|.|:::...|...:.|.|.|.||...||..|||:                  
 Worm   270 --TRAYIAKDNRGLRIERVQPSDEGEYVCYARNPAGTLEASAHLRVQ------------------ 314

  Fly   470 VRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWI 534
                                        :.|..:..|.:.:...|..||..|..||.|:|...|.
 Worm   315 ----------------------------APPSFQTKPADQSVPAGGTATFECTLVGQPSPAYFWS 351

  Fly   535 YNETQ------LVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVR--- 590
            ....|      .|....|.::..:|.|.|..:|.||.|.|:|...|.|||...:|.|.|..:   
 Worm   352 KEGQQDLLFPSYVSADGRTKVSPTGTLTIEEVRQVDEGAYVCAGMNSAGSSLSKAALKVTTKAVT 416

  Fly   591 --TQIIQPPV------DTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPIS-NSQRIGVQA 646
              |....||.      :.|:::|.:|.|.|:.|..|:.  .|.|.|:|   .||. ...||...:
 Worm   417 GNTPAKPPPTIEHGHQNQTLMVGSSAILPCQASGKPTP--GISWLRDG---LPIDITDSRISQHS 476

  Fly   647 DGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLPEP--------QQR 703
            .|.|.|..::..|.|.|.|:..:..|..|.:|.|:|.:   ..||.:..|:|:|        |..
 Worm   477 TGSLHIADLKKPDTGVYTCIAKNEDGESTWSASLTVED---HTSNAQFVRMPDPSNFPSSPTQPI 538

  Fly   704 SINVS-------W-TPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSADQRWILLEN 760
            .:||:       | .|...|..||:.:|||...       ||....|......|::.:  ..::.
 Worm   539 IVNVTDTEVELHWNAPSTSGAGPITGYIIQYYS-------PDLGQTWFNIPDYVASTE--YRIKG 594

  Fly   761 LKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGF---------VGSARSMSEIITQ 816
            ||.:..|.|.:.|.|..|.|:||..|.:|...:.|..   |..         :...|..||.:.:
 Worm   595 LKPSHSYMFVIRAENEKGIGTPSVSSALVTTSKPAAQ---VALSDKNKMDMAIAEKRLTSEQLIK 656

  Fly   817 ---------------WQP-PLEEHRNGQILGYILRYRLFGYNNVPWS----YQNITNEAQRNFLI 861
                           |:. .|||    .|.||.:::|     ..|.:    |.|:|:.:..|:::
 Worm   657 LEEVKTINSTAVRLFWKKRKLEE----LIDGYYIKWR-----GPPRTNDNQYVNVTSPSTENYVV 712

  Fly   862 QELITWKDYIVQIAAYNNMGV----GVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPP 922
            ..|:.:.:|...:..|:: ||    |..:....:.|.|..|..||.:|::..:|.|..|..|..|
 Worm   713 SNLMPFTNYEFFVIPYHS-GVHSIHGAPSNSMDVLTAEAPPSLPPEDVRIRMLNLTTLRISWKAP 776

  Fly   923 NPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTA------ILGGLEKFTE 981
            ....||||.:|::|      :|.|:..:..|.:.|         .|:.|      ::.|:    .
 Worm   777 KADGINGILKGFQI------VIVGQAPNNNRNITT---------NERAASVTLFHLVTGM----T 822

  Fly   982 YNISVLCFTDPGDGVA--SSQVAVMTMDDVPDEVTGLHFDD------VSDRSVKVL--------- 1029
            |.|.|...::.|.||:  :|:| :|..|.:...:.....::      ::...|.|:         
 Worm   823 YKIRVAARSNGGVGVSHGTSEV-IMNQDTLEKHLAAQQENESFLYGLINKSHVPVIVIVAILIIF 886

  Fly  1030 ---------WAPPRASNGILTGYTVRYQVKDR--------------------------------- 1052
                     |...|.|:|           |||                                 
 Worm   887 VVIIIAYCYWRNSRNSDG-----------KDRSFIKINDGSVHMASNNLWDVAQNPNQNPMYNTA 940

  Fly  1053 -----------------PDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKTATI- 1099
                             |:....|| ..||...|:::..:..||.:..:      :|.|..|.. 
 Worm   941 GRMTMNNRNGQALYSLTPNAQDFFN-NCDDYSGTMHRPGSEHHYHYAQL------TGGPGNAMST 998

  Fly  1100 ----QSGVEPVLPHAPTALALSN----------IEAFSVVLQFTP-------------------- 1130
                |...:| .|:|.|.|.|||          :.|.::.....|                    
 Worm   999 FYGNQYHDDP-SPYATTTLVLSNQQPAWLNDKMLRAPAMPTNPVPPEPPARYADHTAGRRSRSSR 1062

  Fly  1131 GFDGNSSIT---KWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSK 1192
            ..||..::.   ..:..|....:         :.|..:       |.:.|    |.:|:..||||
 Worm  1063 ASDGRGTLNGGLHHRTSGSQRSD---------SPPHTD-------VSYVQ----LHSSDGTGSSK 1107

  Fly  1193 ---------PSEATKDFQTIQARPKHPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYK 1248
                     |::...||  |...|.:||                            |.|.:: |.
 Worm  1108 ERTGERRTPPNKTLMDF--IPPPPSNPP----------------------------PPGGHV-YD 1141

  Fly  1249 QLVKTPGTIKYVPRSVVIEDHTANSHVLDSLEEWTLYEVKMNA---------------------- 1291
            .:.:|      ..|..:....|......||:.:.....|.:||                      
 Worm  1142 DIFQT------ATRRQLNRGSTPREDTYDSVSDGAFARVDVNARPTSRNRNLGGRPLKGKRDDDS 1200

  Fly  1292 ------CNDVGCSKESDTA-----VER--TREAVPSYG-PLDVQANATSSTTVVVQ-WGEVPRQH 1341
                  .:|.|.|.|:|..     |.|  .|:|||..| .....|::...|....| :..:||  
 Worm  1201 QRSSLMMDDDGGSSEADGENSEGDVPRGGVRKAVPRMGISASTLAHSCYGTNGTAQRFRSIPR-- 1263

  Fly  1342 RNG 1344
            .||
 Worm  1264 NNG 1266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 26/88 (30%)
Ig 280..344 CDD:409353 10/63 (16%)
Ig strand B 280..283 CDD:409353 0/2 (0%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 1/3 (33%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 27/90 (30%)
Ig strand B 378..382 CDD:409353 1/3 (33%)
Ig strand C 391..395 CDD:409353 1/3 (33%)
Ig strand E 416..420 CDD:409353 1/3 (33%)
Ig strand F 430..435 CDD:409353 1/4 (25%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 28/90 (31%)
Ig strand B 517..521 CDD:409353 2/3 (67%)
Ig strand C 530..534 CDD:409353 0/3 (0%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 28/96 (29%)
Ig strand B 608..612 CDD:409353 2/3 (67%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 2/3 (67%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 1/2 (50%)
FN3 686..789 CDD:238020 31/118 (26%)
FN3 798..893 CDD:238020 23/127 (18%)
FN3 901..1005 CDD:238020 29/111 (26%)
FN3 <960..>1261 CDD:442628 67/429 (16%)
fn3 1317..1402 CDD:394996 7/29 (24%)
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
sax-3NP_001024990.1 Ig 31..129 CDD:472250 29/103 (28%)
Ig strand B 48..52 CDD:409353 1/3 (33%)
Ig strand C 60..64 CDD:409353 0/3 (0%)
Ig strand E 87..91 CDD:409353 1/3 (33%)
Ig strand F 107..112 CDD:409353 2/4 (50%)
Ig strand G 121..124 CDD:409353 1/2 (50%)
IgI_2_Robo 136..223 CDD:409389 29/191 (15%)
Ig strand A 136..139 CDD:409389 0/2 (0%)
Ig strand A' 141..145 CDD:409389 0/3 (0%)
Ig strand B 149..156 CDD:409389 1/6 (17%)
Ig strand C 164..169 CDD:409389 2/4 (50%)
Ig strand C' 171..174 CDD:409389 3/65 (5%)
Ig strand D 180..184 CDD:409389 1/41 (2%)
Ig strand E 188..194 CDD:409389 2/7 (29%)
Ig strand F 201..209 CDD:409389 3/7 (43%)
Ig strand G 212..223 CDD:409389 6/12 (50%)
I-set 227..313 CDD:400151 26/89 (29%)
Ig strand B 244..248 CDD:409353 1/3 (33%)
Ig strand C 257..261 CDD:409353 1/3 (33%)
Ig strand E 278..283 CDD:409353 1/4 (25%)
Ig strand F 293..298 CDD:409353 1/4 (25%)
Ig strand G 306..309 CDD:409353 1/2 (50%)
Ig 319..411 CDD:472250 28/91 (31%)
Ig strand B 334..338 CDD:409353 2/3 (67%)
Ig strand C 347..351 CDD:409353 0/3 (0%)
Ig strand E 376..380 CDD:409353 2/3 (67%)
Ig strand F 390..395 CDD:409353 2/4 (50%)
Ig strand G 403..406 CDD:409353 0/2 (0%)
Ig 427..512 CDD:472250 26/89 (29%)
Ig strand B 442..446 CDD:409353 2/3 (67%)
FN3 <448..842 CDD:442628 108/442 (24%)
Ig strand C 455..459 CDD:409353 1/3 (33%)
Ig strand E 478..482 CDD:409353 2/3 (67%)
Ig strand F 492..497 CDD:409353 2/4 (50%)
Ig strand G 505..508 CDD:409353 1/2 (50%)
FN3 531..624 CDD:238020 26/101 (26%)
Blue background indicates that the domain is not in the aligned region.

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