DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and rig-4

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:2434 Identity:710/2434 - (29%)
Similarity:1069/2434 - (43%) Gaps:377/2434 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 PRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRWLKDGVPVGDFS-----SSQFYRFHSTRRE 131
            |.|....|....:..||....|:|......: .|.|     .:||.|     :|:|....::|..
 Worm    29 PIFQDGGSVEQKVAVEGEIIRLKCDDAELAE-QYEW-----RIGDASGELIATSKFCEVQASRVN 87

  Fly   132 DAGSYQCIARNDAGSIFSEKSDVVVAYMGIFENTTEG---RLTVISGHPAIFDMPPI---ESIPV 190
            |...|:|:|||..|:..|..|.|...|:..|:.:.|.   .:|...|...:...|.:   .::.:
 Worm    88 DEKKYRCVARNTVGAAISPPSMVRSKYLDDFDASDESVQYEVTTGVGRYFVLRRPTLLASRNLDI 152

  Fly   191 PSVMWQSEDG-PLNYDIKYAFTHANQLIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSG- 253
             |..|..:|. .:..|..:..|....|::.....:|...|:..|.:..| ||..|...::..:| 
 Worm   153 -SYSWIKDDSHQVTPDATHFVTSDGNLVVTGVKRDDFGAYKLMASSDDL-KEIVSKEYNVRDNGL 215

  Fly   254 DPYIEVAPEIIVRPQDVKVKVGTGVVE--------LQCIANARPLHELETLWLKDG--LAVETAG 308
            .|.::....|:..|.|      ..::|        ..|:.:.....::...|..:|  ::....|
 Worm   216 SPSLQNTLSIVYFPTD------RTIIESTLPHDEIFDCVTSFGSKDDVRIRWFLNGQQISGSEVG 274

  Fly   309 VRHTLNDPWNRTLALLQANSSHSGEYTCQVRLRSG-GYPAVSASARLQILEPPLFFTPMRAETFG 372
            :..|||   ||.|.:...:|...||:..:.|..:. |..:...||.:..:..|: ...:..|...
 Worm   275 MTTTLN---NRRLIISNPSSFTRGEHKLECRADAAMGRTSDQKSAYMTFISRPI-LKDLPNEIQK 335

  Fly   373 EFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAIN 437
            ..|..:.|.|.|..:.:..:||::|          |.........|.|.::..||..::||.|.|
 Worm   336 TVGSSLSLKCSVKKKSSMDIKWYKN----------GLMMTTQRGKLTIDRIKQDDFGLYQCEATN 390

  Fly   438 EAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSE------------SGSSDR 490
            .||.:.||.|  ||...|...|         ....|..|:..|:...            ..|..:
 Worm   391 AAGADLASVW--VKEGEANETV---------ATEMSEDGMSLEEEISMETPPPRKLKFFDNSKSQ 444

  Fly   491 RKEFRFAS--APIMEL--PPQNVTALDGKD-ATISCRAVGSPNPNITWIYNETQLVDISSRVQIL 550
            .:.|.|.|  .|..:|  .|:::|...|.| ..:.|.|.|||.|||.|:.|..::...:.:..:.
 Worm   445 EQLFPFTSELEPSQKLIKTPKDLTVASGTDRIMMECAATGSPPPNIIWLLNGHEIQTDNVKYDLT 509

  Fly   551 ESGDLLISNIRSVDAGLYICVRANEAGS-VKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKV 614
            ..| |.|.:||..|.|.|.|   ..:|| ||..|.:.|...:.|...|.|...|:|......|:|
 Worm   510 NDG-LAIHDIRKSDEGEYTC---EISGSNVKATANVQVNGDSLIEYGPADQKSLIGTNVEFSCEV 570

  Fly   615 SSDPSVPYNIDWYR-------EGQSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGG 672
            :.:.....:::||.       .|.|...||.:::      |.|.|:.|...:.|.|.|.||..|.
 Worm   571 AKEYVRKASVEWYLNDVLLPVNGNSGLRISRNRK------GSLIIRQVGPDNTGEYRCRVTVDGR 629

  Fly   673 NETRAARLSVIELPFPPSNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPD 737
            .|..:|.|.:||.|..|..|:.|...|.....:.|.|..|||||.||.|..|:.|.:...|...|
 Worm   630 EENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDGNEPIIKHAIEMRTMGPTGLWSD 694

  Fly   738 PLLNWITELSNVSADQR----WILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSG 798
                |.|.:.|:..::.    |..:|:|:.::..:|||.|.|:.|.|.||.||..|.:||:.||.
 Worm   695 ----WTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVASNKHGPGKPSLPSYSVTMPQQPPSA 755

  Fly   799 PPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQE 863
            .|.....||||...::.|||.|.||..:|.:|||::||||.||:::.|:.:|:|.:..||.|:.|
 Worm   756 APRNVAASARSPHSVMVQWQQPKEELDSGDVLGYVVRYRLAGYSSLTWNEKNLTTKDARNTLVDE 820

  Fly   864 LITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQIN 928
            ||||::|.:|:||||..|:||::|..::.|.||.|...|.||:|:.:||||....:|.|..|:|.
 Worm   821 LITWREYEIQVAAYNKRGLGVFSESIEVTTSEGRPTQAPKNVRVKVLNSTAVAIEFTAPEQQRIP 885

  Fly   929 GINQGYKIQAWQRRLIDGE-WRDIERRMKTVPPSLIDPLAEQ-TAILGGLEKFTEYNISVLCFTD 991
            |:|.|||:|.|:.....|| ::.:          ::||...| |.::..||||..||::.||||.
 Worm   886 GVNLGYKVQFWKGEPEKGELYKQV----------ILDPDRRQLTTVVNELEKFGHYNLTTLCFTT 940

  Fly   992 PGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDTL 1056
            ||||..|:.|.|:|.:|.|:.|..|...:|......:.|..|...|||:|.||:|:.....||..
 Worm   941 PGDGPRSNVVKVVTEEDTPESVDELSIAEVMYNGAVITWNSPLKQNGIVTKYTIRHWAASSPDVK 1005

  Fly  1057 KSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALALSNIEA 1121
            ....:....|..|::.||.:|.|..:::|.||.|.|..:....:|||.|.||..|:.|::.:|.|
 Worm  1006 TKHEVDGSTTNFTIDGLQPSTRYGVDVMASTRKGDGPVEETKFESGVPPELPGRPSMLSIGDISA 1070

  Fly  1122 FSVVLQFTPGFDGNSSITKWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASN 1186
            .:|.|.|||||||:::|.:|.|||:.|.:..:..:..::.|.|.::|||||.|||||:|||.|.|
 Worm  1071 TTVQLHFTPGFDGHTAIRQWVVEGKMADSSVFAHVFNVSAPKARSITVTGLRPFTQYQLRLIAEN 1135

  Fly  1187 VVGSSKPSEATKDFQTIQARPKHPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQL- 1250
            |.|...|||.::.|:|:|..|..|...:....:||..:.|.|.||..|.|.|.|:||.|.|::: 
 Worm  1136 VKGRGAPSEPSRSFETLQTNPDTPSQRLFAEPVSATSISVSWTPLLATHWNGQPKGYLIVYREID 1200

  Fly  1251 ------VKTPGTIKYVPRSVVIEDHTANSHVLDSLEEWTLYEVKMNACNDVGCSKESDTAVERTR 1309
                  |:||..             .::.|.:..|..:|.|||.:.:.|..|.|..:|:...||.
 Worm  1201 DENWKEVRTPAL-------------RSSEHTVTDLRPFTSYEVNVFSENGFGRSLPTDSVKARTY 1252

  Fly  1310 EAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKT----IPNN 1370
            |:|||..|.::...|..|...:::|..|.....||.:.|||: ....:|...:..:|    ||..
 Worm  1253 ESVPSGSPRNIVVTAEGSKAAIIKWNPVAELSTNGDVIGYKL-RVVPERESLMADETKVIDIPGQ 1316

  Fly  1371 ATFTTTLTELKKYVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIW 1435
            :|....:::|:.:..|||.:.|||.:|||..::.||..:|.||.|..|.:.....:|....|:.|
 Worm  1317 STLMAKVSDLRPFTSYHVYMSAYTIVGNGPENSTPISFETMEDVPAPPESFQCSYISEQEVRMKW 1381

  Fly  1436 DVPVDPNGKILAYQVTY-------------TLNGSAMLNYSREFPPSDRTFRATELLPGKYYSFS 1487
            ..|..|||||..|.::|             .|.|:.::            |.|..|.|...|:|:
 Worm  1382 LPPGSPNGKITNYIISYWKSHEPRSMAIDAPLLGNLLM------------FAAMSLNPNTQYTFA 1434

  Fly  1488 CTAQTRLGWGKIATALVYTTNNRERP--QAPSVPQISRSQIQAHQITFSWTPG------RDGFAP 1544
            ..|:...|..:.|.|.|.|::.| .|  .||:..:.:.||.||.:|...|...      .|..:|
 Worm  1435 IKARNSKGESEEAVAEVMTSSVR-LPVRNAPAPVRDTLSQHQATEIIIRWDESLPRKLTEDAESP 1498

  Fly  1545 LRYYTVE-MRENEGRWQPLPERVDPSLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIVRT 1608
            :|...|. .:.||..|..|.::.:.|........|.|...::|||:...|...|::|.||..:||
 Worm  1499 VRAVQVSYQKTNEDEWITLEKKFEYSKRRSVIKHLSPNSMFRFRIRFIGDFLESSWSPESEWMRT 1563

  Fly  1609 LPAAPAVGVGGLKVVPITTTSVRVQWSALETALWNGDASTGGYRILYQQLSDFPT-ALQSTPKTD 1672
            ||:||......||..|....||:::|.....:.||.||.  ||||.|::.....| .::.....|
 Worm  1564 LPSAPFAQPISLKATPYERNSVQLEWVVPHKSTWNSDAI--GYRIHYREYPSNETWQMEEIAIRD 1626

  Fly  1673 VHGINENSVVLSDLQQDRNYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGEPRAVDAAPISSTEV 1737
            .|...|.. :|:.|...::|.:.:..|||:|.||.:.|...|||.::|......:...|:||:.:
 Worm  1627 EHEDKEEK-ILAKLDSFKHYILRMRIFNSEGEGPFSAPVFAYVGYSIPKRNLNNIITEPLSSSSI 1690

  Fly  1738 RLLWKP-PKQSMQNGDILGYKIYYLVTYSPQALEPGRKWEEEIEVVSATATSHSLVFLDKFTEYR 1801
            |:.|.. ||:..:.  |..:|:.|:...|..:....   ||||.:|.....  :|..|.|||||:
 Worm  1691 RVKWDAWPKEDSET--ITSFKVRYVPVASVLSSVSS---EEEIMIVDTNEC--TLNDLRKFTEYQ 1748

  Fly  1802 IQLLAFNPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGYLVTYE 1866
            |.:..:|.||:| :.:.:..|||...|.....|||||:.|.|::|:||.|...||.::||:|.|:
 Worm  1749 ISVSPYNRAGEG-KMSQVRDKTLEDKPGPVGILRFSDVLMDSVKVSWDEPSQPNGNVIGYIVNYK 1812

  Fly  1867 TTEENEKFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGPQDGSPVAPR 1931
            .....|:|..:.:|:.|........|.|.|||.|:|.|:||...|...|.|||.||....|..|.
 Worm  1813 GYRMQEEFKNEDQQRTSRNYFDTHGLAEGVTYFFSVWAETSAGKGEQRSANVTIGPSKDGPPPPS 1877

  Fly  1932 DLILTKTLSSVEMHWINGPSGRGPILGYLIEAK------------------KRDD---------- 1968
            ...:|...|.|.::| |..:....|:|:|::||                  :|::          
 Worm  1878 KPQITSGQSYVTLNW-NDVADSDEIVGHLLQAKRVSVAEEAPANGYVSQRPRRNEIKGAKSAAQT 1941

  Fly  1969 ------------SRWTKIEQTRKGMMQDFTVSYHILMPSTAYTFRVIAYNRYGISFPVYSKDSIL 2021
                        ..|..:..| :|..:...|||..|.||:.|.|||...|..||.......:.:.
 Worm  1942 AAATSTRPTHPIGEWITLRPT-EGRSEKEQVSYRELQPSSYYAFRVFTRNVRGIGMASVETEQLF 2005

  Fly  2022 TPSKLHLEYGYLQHKPFYRQTWFMVSLAATSIVIIVMVIAVLCVKSKSYKYKQEAQKTLEESMAM 2086
            .|..       :...|||...|||..:|..:.|:||::||:|||...|.||::|.:       :.
 Worm  2006 VPES-------IPDDPFYTTWWFMALVAMGAFVLIVIIIAILCVTGSSAKYRREKR-------SR 2056

  Fly  2087 SIDERQELALELYRSRHGVGTGTLNSVGTLRSGTLGTLGRKST--------SRPPP--GVHLGKS 2141
            |||..| ||...:.|....||...|..   ||..|.|  |..|        ||.||  |..||.|
 Worm  2057 SIDSLQ-LADGNFASFQLKGTSAANMT---RSRELPT--RPGTTQSWVSDQSREPPAYGSVLGGS 2115

  Fly  2142 -----------------PPRPSPASVAYHSDEESLK---------------CY--------DEN- 2165
                             ||.|:  |...|:..|:::               .|        .:| 
 Worm  2116 RNSGGVMNMYGLATDVIPPLPN--SGPPHTSVEAMQKLSALVGRDIRSQNTAYVTPSARGGSDNG 2178

  Fly  2166 -----PDDSSVTEKPSEVSSSEASQH--------------------------SESENESVRSDP- 2198
                 |..|.:....||....|...|                          |..|.|.|..|. 
 Worm  2179 RNEYMPTRSDLYATRSEYGRVEYRGHIPSSSGGSGAGSQPQGSPLQQPEVYDSFDEEEDVVDDDT 2243

  Fly  2199 ------------HSFVNHYANVNDSLRQSWKKTK-------PV--------RNYSSYTDSEPEGS 2236
                        .....||.: .|..|.:|:|.:       |:        ...||.|||..||.
 Worm  2244 VIRGDRTMTDGVDDIARHYGS-TDQYRDTWRKVRDTDMVRAPILTGHPSSAAGRSSTTDSTSEGP 2307

  Fly  2237 AVMSLNGGQIIVNNMARSRAPLPGFSSFV 2265
            ..           |:..:.....||||||
 Worm  2308 WA-----------NIPATPNLTTGFSSFV 2325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 25/89 (28%)
I-set 72..150 CDD:254352 22/82 (27%)
Ig 172..245 CDD:299845 14/76 (18%)
IG_like 280..356 CDD:214653 18/86 (21%)
Ig 280..343 CDD:299845 15/72 (21%)
IG_like 375..450 CDD:214653 21/74 (28%)
Ig 378..447 CDD:143165 19/68 (28%)
Ig 506..587 CDD:299845 28/82 (34%)
IG_like 506..587 CDD:214653 28/82 (34%)
I-set 592..682 CDD:254352 26/96 (27%)
Ig 595..682 CDD:299845 25/93 (27%)
FN3 686..789 CDD:238020 36/106 (34%)
FN3 798..893 CDD:238020 42/94 (45%)
FN3 901..1005 CDD:238020 42/105 (40%)
fn3 1011..1094 CDD:278470 25/82 (30%)
FN3 1108..1202 CDD:238020 43/93 (46%)
FN3 1210..1308 CDD:238020 28/104 (27%)
fn3 1317..1402 CDD:278470 25/88 (28%)
FN3 1415..1507 CDD:238020 26/104 (25%)
FN3 1513..1608 CDD:238020 28/103 (27%)
fn3 1617..1708 CDD:278470 28/91 (31%)
FN3 1722..1823 CDD:238020 28/101 (28%)
FN3 1828..1920 CDD:238020 36/91 (40%)
FN3 1927..2016 CDD:238020 29/128 (23%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 22/83 (27%)
IGc2 338..393 CDD:197706 16/64 (25%)
I-set 459..543 CDD:254352 29/87 (33%)
IGc2 478..534 CDD:197706 20/59 (34%)
IG_like 553..639 CDD:214653 25/91 (27%)
Ig 564..635 CDD:143165 19/76 (25%)
FN3 643..747 CDD:238020 36/107 (34%)
FN3 756..850 CDD:238020 42/93 (45%)
FN3 858..954 CDD:238020 42/105 (40%)
FN3 959..1042 CDD:238020 25/82 (30%)
FN3 1057..1151 CDD:238020 43/93 (46%)
FN3 1156..1251 CDD:238020 29/107 (27%)
FN3 1258..1356 CDD:238020 27/98 (28%)
FN3 1361..1453 CDD:238020 26/103 (25%)
FN3 1464..1560 CDD:238020 26/95 (27%)
FN3 1572..1664 CDD:238020 28/94 (30%)
FN3 1679..1764 CDD:238020 28/92 (30%)
FN3 1774..1858 CDD:238020 32/83 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 95 1.000 Domainoid score I4657
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10406
Inparanoid 1 1.050 881 1.000 Inparanoid score I202
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46050
OrthoDB 1 1.010 - - D134749at2759
OrthoFinder 1 1.000 - - FOG0002891
OrthoInspector 1 1.000 - - oto17953
orthoMCL 1 0.900 - - OOG6_104033
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4749
SonicParanoid 1 1.000 - - X1909
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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