DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Dscam

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_038943864.1 Gene:Dscam / 171119 RGDID:619992 Length:2034 Species:Rattus norvegicus


Alignment Length:2449 Identity:546/2449 - (22%)
Similarity:881/2449 - (35%) Gaps:699/2449 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 YADANLQQQNSIVQQQQLQAPRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRW-LKDGVPVG 115
            :.:|:||:               ....|:||::|        .|.|.|.|..|.|| |..|..:.
  Rat    26 FVNASLQE---------------VVFASTSGTLV--------PCPAAGIPPVTLRWYLATGEEIY 67

  Fly   116 D-----------------FSSSQFYRFHSTRREDAGSYQCIARNDAGSIFSEKSDVVVAYMGIFE 163
            |                 |..|.|    ||...| .:|.|.|.|.:|.|.|:...:.......:.
  Rat    68 DVPGIRHVHPNGTLQIFPFPPSSF----STLIHD-NTYYCTAENPSGKIRSQDVHIKAVLREPYT 127

  Fly   164 NTTEGRLTVISGHPAIFD--MPPIESIPVPSVMWQSEDGPLNYDIKYAFTHANQLIILSA-DEND 225
            ...|.:.| :.|:.|:|.  :|......|..|.|:.:...|....::..|....|.|... :|:.
  Rat   128 VRVEDQKT-MRGNVAVFKCIIPSSVEAYVTVVSWEKDTVSLVSGSRFLITSTGALYIKDVQNEDG 191

  Fly   226 RKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIANARPL 290
            ...||....:...|:...|....|.|| || ...||.|:......|...|.. |||.|.|...| 
  Rat   192 LYNYRCITRHRYTGETRQSNSARLFVS-DP-ANSAPSILDGFDHRKAMAGQR-VELPCKALGHP- 252

  Fly   291 HELETLWLKDGLAVETAGVRHTLNDPWNRTL-ALLQANS--SHSGEYTCQVRLRSGGYPAVSASA 352
             |.:..||||.:.:|.:|       .:.:|: .||..||  |.||.|.|:|   |..|.......
  Rat   253 -EPDYRWLKDNMPLELSG-------RFQKTVTGLLIENSRPSDSGSYVCEV---SNRYGTAKVIG 306

  Fly   353 RLQILEP-PLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYT-LNTD 415
            ||.:.:| ....:|.:.::  ..|.||.|:|.|.|....::.|:||.|.::.. ::.|.| ||..
  Rat   307 RLYVKQPLKATISPRKVKS--SVGSQVSLSCSVTGNEDQELSWYRNGEILNPG-KNVRITGLNHA 368

  Fly   416 NTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSE 480
            | |::..::..|...:||....:  :.||..:::|        |.....|:|:..          
  Rat   369 N-LIMDHMVKSDGGAYQCFVRKD--KLSAQDYVQV--------VLEDGTPKIISA---------- 412

  Fly   481 KGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISS 545
                           |:...:....|          .::.|...|:|.|.:||..::..::..|.
  Rat   413 ---------------FSEKVVSPAEP----------VSLVCNVKGTPLPTVTWTLDDDPILKGSG 452

  Fly   546 -RV--QILESGDLL----ISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVL 603
             |:  .|...|:::    ||:.:..|.|:|.|...|.||.|..:|.::|..... |:|..:.|.:
  Rat   453 HRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPAS-IRPMKNITAI 516

  Fly   604 LGLTATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRAS-DVGSYAC-V 666
            .|....:.|:|...|.  |:|.||:.. :..|. |.:::..:.:|.|::..|:.. |.|.|.| |
  Rat   517 AGRDTYIHCRVIGYPY--YSIKWYKNA-NLLPF-NHRQVAFENNGTLKLSDVQKEVDEGEYTCNV 577

  Fly   667 VTSPGGNETRAARLSV--------IELP--------FPPSNVKVERLPEPQQRSINVSWTPGFDG 715
            :..|..:.:::..::|        .|.|        |.|..|....||      |.::|..  ||
  Rat   578 LVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLP------ITITWQK--DG 634

  Fly   716 NSPISKFIIQRREVSELGPVPDPL------LNWITEL--SNVSADQRWILLENLKAATVYQFRVS 772
            .                 |:|..|      :::.:.|  ||:|      |:.|.....:.:...:
  Rat   635 R-----------------PIPASLGVTIDNIDFTSSLRISNLS------LMHNGNYTCIARNEAA 676

  Fly   773 AVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYR 837
            ||....:.....|...|..|::..     |..|.|                        .||...
  Rat   677 AVEHQSQLIVRVPPKFVVQPRDQD-----GIYGKA------------------------VILNCS 712

  Fly   838 LFGYNNVPWSYQNITNEAQRNFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPP 902
            ..|| .||                  .|.||                :::|:      |||:..|
  Rat   713 AEGY-PVP------------------TIVWK----------------FSKGA------GVPQFQP 736

  Fly   903 TNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLA 967
            .                      .:||     :||.    |.:|              ||:    
  Rat   737 I----------------------ALNG-----RIQV----LSNG--------------SLL---- 752

  Fly   968 EQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDEVTGLHFDDVSDRSV-KVLWA 1031
                |...:|:.:.|   .||......|...|:...:|: .:|..:|......::.:.. |.:..
  Rat   753 ----IKHVVEEDSGY---YLCKVSNDVGADVSKSMYLTV-KIPAMITSYPNTTLATQGQRKEMSC 809

  Fly  1032 PPRASNGILTGYTVRYQVKDR---PDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGI 1093
            .......|:    ||::.:||   |:..:....|.:..|..::.||        |:...|..||.
  Rat   810 TAHGEKPII----VRWEKEDRIINPEMARYLVSTKEVGEEVISTLQ--------ILPTVREDSGF 862

  Fly  1094 PKTATIQS-----GVEPVL---PHAPTALALSNIEAFSVVLQFTPGFDGNSSITKWKVEGQTARN 1150
            .....|.|     |:..:.   |..|..:.:.:::|.::.|::|.||||||.||.:.:|.:. ::
  Rat   863 FSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYDIECKN-KS 926

  Fly  1151 MTWFTICEIND--PDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSE---ATKDFQTIQARPKHP 1210
            .:|.:.....|  |...:.|:..:.|.:.|.:|:.|.|.:|.|:||.   .|.|    :|.|..|
  Rat   927 DSWDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNEITITAD----EAAPDGP 987

  Fly  1211 PFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANSHV 1275
            |..|.:...|:|.:||.|...::....|..|||.|.|:: ..|.|..::   :::..|.|.:|.|
  Rat   988 PQEVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYRE-YSTGGNFQF---NIISIDTTGDSEV 1048

  Fly  1276 --LDSLEEWTLYEVKMNACNDVGCSKESDTAVERTREAVPSYGPLDVQANATSSTTVVVQWGEVP 1338
              ||:|.::|.|.:.:.|||..|....|...:..|.|.||||.|.:|||.|||..::.:.|..:.
  Rat  1049 YTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLS 1113

  Fly  1339 RQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNATFTTT-----LTELKKYVVYHVQVLAYTRLGN 1398
            ::..||.:.|::|.|.|     .::...:......|||     |..|:||..|.:||||:||.|:
  Rat  1114 KEALNGILQGFRVIYWA-----NLIDGELGEIKNVTTTQPSLELDGLEKYTNYSIQVLAFTRAGD 1173

  Fly  1399 GALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIWDVPVDPNGKILAYQV------------- 1450
            |..| ..|..:|.||.||.|:.|.....|.:|..:.|..|:..||.|..|.|             
  Rat  1174 GVRS-EQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEF 1237

  Fly  1451 -------TYTL-NGSAMLNYS-----------------------REFPPSDRTFRATE------- 1477
                   :|.: |.|....||                       .:.|....||..|.       
  Rat  1238 EASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSGTVTTPWMKD 1302

  Fly  1478 -LLPGK-----------------------------------------------YYSFSCTAQTRL 1494
             :||.|                                               ||  ||.|..  
  Rat  1303 IVLPCKAVGDPSPAVKWMKDSNGTPSLVTIDGRRSIFSNGSFVIRTVKAEDSGYY--SCVANN-- 1363

  Fly  1495 GWGKIATALVYTTNNRERPQAPSVPQISRSQIQAHQITFSWTPGRDGFAPLRYYTVEMRE-NEGR 1558
            .||.....|     |.:....|..|:::.|:..:..||.||.||.:|.:.:|.|.::..| |..:
  Rat  1364 NWGSDEIIL-----NLQVQVPPDQPRLTVSKTTSSSITLSWLPGDNGGSSIRGYILQYSEDNSEQ 1423

  Fly  1559 WQPLPERVDPSLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIVRTLPAAPAVGVGGLKVV 1623
            |...|  :.||..|:....|:....|:|.:.|.|.:||...| |.:..:||...|..........
  Rat  1424 WGSFP--ISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS-EIIEAKTLGKEPQFSKEQELFA 1485

  Fly  1624 PITTTSVRVQWSALETALWN-GDASTGGYRILYQQLSDFPTALQST-PKTDVHGINENSVVLSDL 1686
            .|.||.||     |....|| |......:.:.|:   .|.|.:.:| .:|.:    ..|.:|.||
  Rat  1486 SINTTRVR-----LNLIGWNDGGCPITSFTLEYR---PFGTTVWTTAQRTSL----SKSYILYDL 1538

  Fly  1687 QQDRNYEIVVLPFNSQGPGPATPPAAV--YVGEAVPTGEPRAVDAAPISSTEVRLLWKPPKQSMQ 1749
            |:...||:.:...||.|........|.  |.|..:|          |:..:.|:     .::.:.
  Rat  1539 QEATWYELQMRVCNSAGCAEKQANFATLNYDGSTIP----------PLIKSVVQ-----SEEGLT 1588

  Fly  1750 NGDILGYKIYYLVTYSPQALEPG-------------RKWEEEIEVVSATATSHSLVFLDKFTEYR 1801
            ..:  |.||  |||.|  .:..|             |:.|:.::.: ..|.|.:.:.:.|.|.  
  Rat  1589 TNE--GLKI--LVTIS--CILVGVLLLFVLLLVVRRRRREQRLKRL-RDAKSLAEMLMSKNTR-- 1644

  Fly  1802 IQLLAFNPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGYLVTYE 1866
                    ..|.......|::....:|.|.|.:...| ||::::           :....|:|  
  Rat  1645 --------TSDTLSKQQQTLRMHIDIPRAQLLIEERD-TMETID-----------DRSTVLLT-- 1687

  Fly  1867 TTEENEKFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISENVTTGP-QDGSPVAP 1930
                :..|.:..|||             .:|.|.||..|         |.:..||| .|.|...|
  Rat  1688 ----DADFGEAAKQK-------------SLTVTHTVHYQ---------SVSQATGPLVDVSDARP 1726

  Fly  1931 RDLILTKTLSSVEMHWINGPSGRGPILGYLIEAKKRDDSRWTKIEQTRKGMMQDFTVSYHIL--- 1992
            .....|:..:..      ||:           |:.|..|:|| :.:...      |:|.|.|   
  Rat  1727 GTNPTTRRNAKA------GPT-----------ARNRYASQWT-LNRPHP------TISAHTLTTD 1767

  Fly  1993 --MPSTAYTFRV-IAYNRYGISFP-----------VYSKDSILTPSKLHLEYGY------LQHKP 2037
              :|:...|..| ...:.|.:| |           |.::.:..|..:|...|.:      |:|..
  Rat  1768 WRLPTPRATGSVDKESDSYSVS-PSQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAK 1831

  Fly  2038 FYRQTWFMVSLAA-----------TSIVIIVMVIAVLCVKSKSYKYKQEAQKTLEESMAMSIDER 2091
            |.....|:...::           .|:.......:.:|..:.|....|:..:.:  :||:....|
  Rat  1832 FTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTASPPKPQDGGRVV--NMAVPKAHR 1894

  Fly  2092 QELALELYRSRHGVGTGTLNSVGT-------LRSGTLGTLGRKSTSRPPPGVHLGKSPPRPSPAS 2149
            ..|.....:|||.:....|.::|.       ||...|...|...|||   .:.||::        
  Rat  1895 PVLETRSSKSRHQLTHVPLRALGDLIHLPPYLRMDFLLNRGAPGTSR---DLSLGQA-------- 1948

  Fly  2150 VAYHSDEESLKCYDENPDDSSVTEKPS--EVSSSEASQHSESENESVRSDPHSFVNHYANVNDSL 2212
                       |.:  |..|...::|:  |.:..|||..:.|..|.                   
  Rat  1949 -----------CLE--PQKSRTLKRPTVLEPTPMEASSSTSSTREG------------------- 1981

  Fly  2213 RQSWKK----TKPVRNYSSYTDSEPEGSAVMSL--NGGQIIVNN 2250
            :|||::    |.|.|..:....:....|:..||  :.|.:..||
  Rat  1982 QQSWQQGAVATLPQREGAELGQAAKMSSSQESLLDSRGHLKGNN 2025

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 27/103 (26%)
I-set 72..150 CDD:254352 26/95 (27%)
Ig 172..245 CDD:299845 15/75 (20%)
IG_like 280..356 CDD:214653 27/78 (35%)
Ig 280..343 CDD:299845 23/65 (35%)
IG_like 375..450 CDD:214653 22/75 (29%)
Ig 378..447 CDD:143165 20/69 (29%)
Ig 506..587 CDD:299845 22/87 (25%)
IG_like 506..587 CDD:214653 22/87 (25%)
I-set 592..682 CDD:254352 22/91 (24%)
Ig 595..682 CDD:299845 21/88 (24%)
FN3 686..789 CDD:238020 22/118 (19%)
FN3 798..893 CDD:238020 13/94 (14%)
FN3 901..1005 CDD:238020 16/103 (16%)
fn3 1011..1094 CDD:278470 16/86 (19%)
FN3 1108..1202 CDD:238020 29/98 (30%)
FN3 1210..1308 CDD:238020 30/99 (30%)
fn3 1317..1402 CDD:278470 30/89 (34%)
FN3 1415..1507 CDD:238020 33/190 (17%)
FN3 1513..1608 CDD:238020 28/95 (29%)
fn3 1617..1708 CDD:278470 24/92 (26%)
FN3 1722..1823 CDD:238020 18/113 (16%)
FN3 1828..1920 CDD:238020 18/91 (20%)
FN3 1927..2016 CDD:238020 20/105 (19%)
DscamXP_038943864.1 Ig 26..121 CDD:416386 30/122 (25%)
Ig strand A' 33..37 CDD:409353 0/18 (0%)
Ig strand B 40..49 CDD:409353 4/16 (25%)
Ig strand C 55..61 CDD:409353 3/5 (60%)
Ig strand C' 63..66 CDD:409353 1/2 (50%)
Ig strand D 72..75 CDD:409353 0/2 (0%)
Ig strand E 80..85 CDD:409353 0/4 (0%)
Ig strand F 98..106 CDD:409353 3/7 (43%)
Ig strand G 109..121 CDD:409353 3/11 (27%)
Ig 125..210 CDD:416386 17/85 (20%)
Ig strand A 126..130 CDD:409353 0/3 (0%)
Ig strand A' 132..136 CDD:409353 1/4 (25%)
Ig strand B 139..149 CDD:409353 2/9 (22%)
Ig strand C 157..163 CDD:409353 2/5 (40%)
Ig strand C' 164..167 CDD:409353 0/2 (0%)
Ig strand E 179..185 CDD:409353 2/5 (40%)
Ig strand F 191..201 CDD:409353 2/9 (22%)
IGc2 239..300 CDD:197706 26/73 (36%)
Ig strand B 242..246 CDD:409353 3/3 (100%)
Ig strand C 255..259 CDD:409353 0/3 (0%)
Ig strand F 290..295 CDD:409353 2/4 (50%)
Ig 313..395 CDD:416386 23/87 (26%)
Ig strand A 314..319 CDD:409353 0/4 (0%)
Ig strand A' 322..326 CDD:409353 0/5 (0%)
Ig strand B 329..339 CDD:409353 5/9 (56%)
Ig strand C 344..350 CDD:409353 1/5 (20%)
Ig strand C' 351..354 CDD:409353 1/2 (50%)
Ig strand E 368..374 CDD:409353 2/6 (33%)
Ig strand F 381..389 CDD:409353 2/7 (29%)
Ig 406..501 CDD:416386 25/129 (19%)
Ig strand A 406..409 CDD:409353 1/2 (50%)
Ig strand A' 415..419 CDD:409353 0/3 (0%)
Ig strand B 422..431 CDD:409353 2/18 (11%)
Ig strand C 436..442 CDD:409353 3/5 (60%)
Ig strand C' 444..447 CDD:409353 0/2 (0%)
Ig strand D 452..460 CDD:409353 1/7 (14%)
Ig strand E 464..473 CDD:409353 1/8 (13%)
Ig strand F 480..488 CDD:409353 3/7 (43%)
Ig strand G 491..501 CDD:409353 3/9 (33%)
Ig 504..593 CDD:416386 22/93 (24%)
Ig strand A 505..507 CDD:409353 0/2 (0%)
Ig strand A' 512..516 CDD:409353 1/3 (33%)
Ig strand B 519..526 CDD:409353 0/6 (0%)
Ig strand C 533..539 CDD:409353 3/5 (60%)
Ig strand C' 540..542 CDD:409353 0/2 (0%)
Ig strand D 549..553 CDD:409353 0/3 (0%)
Ig strand E 557..563 CDD:409353 2/5 (40%)
Ig strand F 571..579 CDD:409353 4/7 (57%)
Ig strand G 583..593 CDD:409353 0/9 (0%)
Ig 596..686 CDD:416386 22/120 (18%)
Ig strand A 597..599 CDD:409353 0/1 (0%)
Ig strand B 611..620 CDD:409353 2/8 (25%)
Ig strand C 625..632 CDD:409353 3/12 (25%)
Ig strand C' 634..636 CDD:409353 1/18 (6%)
Ig strand D 643..648 CDD:409353 0/4 (0%)
Ig strand E 651..658 CDD:409353 1/6 (17%)
Ig strand F 665..673 CDD:409353 0/7 (0%)
Ig strand G 676..685 CDD:409353 2/8 (25%)
Ig_DSCAM 689..784 CDD:409397 35/220 (16%)
Ig strand B 707..711 CDD:409397 2/3 (67%)
Ig strand C 720..724 CDD:409397 1/3 (33%)
Ig strand E 749..753 CDD:409397 3/25 (12%)
Ig strand F 763..768 CDD:409397 3/7 (43%)
Ig strand G 777..780 CDD:409397 1/2 (50%)
Ig_DSCAM 785..884 CDD:409398 20/110 (18%)
Ig strand B 805..809 CDD:409398 1/3 (33%)
Ig strand C 818..822 CDD:409398 2/7 (29%)
Ig strand E 848..852 CDD:409398 2/11 (18%)
Ig strand F 862..867 CDD:409398 0/4 (0%)
Ig strand G 875..878 CDD:409398 1/2 (50%)
FN3 885..978 CDD:238020 27/93 (29%)
FN3 986..1083 CDD:238020 30/100 (30%)
FN3 1091..1184 CDD:238020 32/98 (33%)
FN3 1189..1278 CDD:238020 18/88 (20%)
Ig_3 1287..1363 CDD:404760 11/77 (14%)
Ig strand B 1303..1307 CDD:409353 1/3 (33%)
Ig strand C 1316..1320 CDD:409353 0/3 (0%)
Ig strand E 1342..1346 CDD:409353 0/3 (0%)
Ig strand F 1356..1361 CDD:409353 4/6 (67%)
FN3 1380..1470 CDD:238020 28/92 (30%)
FN3 1486..1555 CDD:238020 23/80 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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