DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and Kirrel

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_011238330.1 Gene:Kirrel / 170643 MGIID:1891396 Length:805 Species:Mus musculus


Alignment Length:512 Identity:121/512 - (23%)
Similarity:184/512 - (35%) Gaps:149/512 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 PYIEVAPEIIV---------------RPQDVKVKVGTGVVELQCI-ANARPLHELETLWLKDGLA 303
            |::.||..|.|               .|.|..|..|...| |.|: .|...:.:    |.|||||
Mouse    32 PHLVVAYLIFVTLALALPGTQTRFSQEPADQTVVAGQRAV-LPCVLLNYSGIVQ----WTKDGLA 91

  Fly   304 VETAGVRHTLNDPWNR------------TLALLQANSSHSGEYTCQ---VRLRSGGYPAVSASAR 353
            :   |:...|. .|.|            .|.:..|..|....|.||   ..||       |..|:
Mouse    92 L---GMGQGLK-AWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALR-------SRRAK 145

  Fly   354 LQILEPPLFFTPMRAETFGEFGGQV---------QLTCDVV-GEPTPQVKWFRNAESVDAHIESG 408
            |.:|.||       .||..: ||.|         .|||... .:|...:.|||:....:..:.|.
Mouse   146 LTVLIPP-------EETRID-GGPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQQEGAVTST 202

  Fly   409 RYTLN-----TDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRV--------------KTKT 454
            ....:     |.:.|:|:...||...:|.|.::|||..|...|.:.:              :|..
Mouse   203 ELLKDGKRETTISQLLIEPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHPPTVTLSIEPQTVL 267

  Fly   455 AKNRV----KRLAQPRILRVRASHAGLGSEKGSES-----------------------GSSDRRK 492
            ...||    :..|.|.||..|.:..|...|...||                       ||::...
Mouse   268 EGERVIFTCQATANPEILGYRWAKGGFLIEDAHESRYETNVDYSFFTEPVSCEVYNKVGSTNVST 332

  Fly   493 EFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNETQL----------VDISSRV 547
            ......||.:.:.|:..|...|.|.|::|..||:|...:||...::.:          .::|::|
Mouse   333 LVNVHFAPRIVVYPKPTTTDIGSDVTLTCVWVGNPPLTLTWTKKDSNMGPRLPGSPPEANLSAQV 397

  Fly   548 QILESGDLLISNIRSVDAGLYICVRA--NEAGSVKGEAYLSV----LVRTQIIQPPVDTTVLLGL 606
             :..|..||:.::...|||.|.| ||  ...|..:.|..|.|    ::.::.:|     ..:.|.
Mouse   398 -LSNSNQLLLKSVTQADAGTYTC-RAIVPRIGVAEREVPLYVNGPPIISSEAVQ-----FAVRGD 455

  Fly   607 TATLQCKVSSDPSVPYNIDW-YREGQSSTPISNSQRIGVQADGQLEIQAVRASDVGS 662
            ...::|.:.|.|. |..|.| ::|        |...:|.     ||...|..::.||
Mouse   456 GGKVECFIGSTPP-PDRIAWAWKE--------NFLEVGT-----LERYTVERTNSGS 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653 24/91 (26%)
Ig 280..343 CDD:299845 21/78 (27%)
IG_like 375..450 CDD:214653 23/89 (26%)
Ig 378..447 CDD:143165 20/83 (24%)
Ig 506..587 CDD:299845 26/92 (28%)
IG_like 506..587 CDD:214653 26/92 (28%)
I-set 592..682 CDD:254352 16/72 (22%)
Ig 595..682 CDD:299845 16/69 (23%)
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
KirrelXP_011238330.1 Ig 54..148 CDD:386229 29/109 (27%)
Ig2_KIRREL3-like 170..251 CDD:143236 20/80 (25%)
Ig 255..336 CDD:386229 14/80 (18%)
Ig_3 340..421 CDD:372822 22/82 (27%)
Ig5_KIRREL3 439..536 CDD:143306 16/79 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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