DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and Chl1

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_006505530.1 Gene:Chl1 / 12661 MGIID:1098266 Length:1225 Species:Mus musculus


Alignment Length:1200 Identity:275/1200 - (22%)
Similarity:474/1200 - (39%) Gaps:199/1200 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IEMP--SQPKLASLLAVLVLLCYCDSCFFCYADANLQQQNSIVQQQQLQ-APRFTTHPSSSGSIV 85
            :|:|  .:..:.||:.:|:.|...:      ...::||..:||:|..:| |..|..:..      
Mouse     2 MELPLCGRGLILSLIFLLLKLSAAE------IPLSVQQVPTIVKQSYVQVAFPFDEYFQ------ 54

  Fly    86 SEGSTKILQCHALGYPQPTYRWLKDGVPVGDFSSSQFYRFHSTR----------REDAGSYQCIA 140
                   ::|.|.|.|:|.:.|.||..|. |.|..:....:::.          ....|.|:|.|
Mouse    55 -------IECEAKGNPEPIFSWTKDDKPF-DLSDPRIIAANNSGTFKIPNEGHISHFQGKYRCFA 111

  Fly   141 RNDAGSIFSEKSDVVVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVMWQS-EDGPLNY 204
            .|..|:..||:.:.:|..:..|.......:.|..|...:....|.:.:|...:.|.: |...:..
Mouse   112 SNRLGTAVSEEIEFIVPGVPKFPKEKIEPIDVEEGDSIVLPCNPPKGLPPLHIYWMNIELEHIEQ 176

  Fly   205 DIKYAFTHANQLIILSADEND-RKGYRAKA-----------------INTQLGKEESSAFVHLNV 251
            |.:...:....|...:.:||| |..|...|                 :|:.....:||:...:..
Mouse   177 DERVYMSQRGDLYFANVEENDSRNDYCCFAAFPKLRTIVQKMPMKLTVNSLKHASDSSSSTEICS 241

  Fly   252 SGDPYIEVAPEIIVRPQDV-----KVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRH 311
            ..:...:..|::::.|..:     |..:....:.|:|.|...|...::  |.|.|  .|....|.
Mouse   242 QANSIKQRKPKLLLPPAQMGSLSAKTVLKGDTLLLECFAEGLPTPHIQ--WSKPG--SELPEGRA 302

  Fly   312 TLNDPWNRTLALLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGG 376
            |: :...:||.:...:....|.|.|......|   ..|....:.:.|||.:....::..:.. |.
Mouse   303 TI-EVHEKTLKIENISYQDRGNYRCTANNLLG---KASHDFHVTVEEPPRWKKKPQSAVYST-GS 362

  Fly   377 QVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGE 441
            ...|.|:..|||.|.:||..|...::.|...|.:....:  :....|:.:...::||.|.|..|.
Mouse   363 SGILLCEAEGEPQPTIKWRLNGLPIEKHPFPGDFMFPRE--ISFTNLLPNHTGVYQCEASNIHGT 425

  Fly   442 NSASTWLRV-------KTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASA 499
            ..|:..:.|       |||.                                             
Mouse   426 ILANANIDVIDVIPLIKTKN--------------------------------------------- 445

  Fly   500 PIMELPPQNVTALDGKDATISCRAVGSPNPNITW-IYNETQLVDISSRVQILESGDLLISNIRSV 563
                  .:|...:.|..|.:.|....||...:.| :.:||..:: ..|....|:|.|.|......
Mouse   446 ------EENYATVVGYSAFLHCEYFASPKATVVWEVADETHPLE-GDRYHTHENGTLEIYRTTEE 503

  Fly   564 DAGLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYN--IDW 626
            |||.|.|...|..|.....|.|.:...|::...|.:..:.......|.|:...|..:.::  :.|
Mouse   504 DAGSYSCWVDNAMGKAVITANLDIRNATKLRVSPKNPRIPKSHVLELYCESQCDSHLKHSLKLSW 568

  Fly   627 YREGQSSTPISNSQRIGVQADG-QLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPS 690
            .::|: :..::.::...:..|| .|.|..:.|.|.|.|:|...:...:.:...:::|:.:|.||.
Mouse   569 SKDGE-AFEMNGTEDGRIVIDGAYLTISNITAEDQGVYSCSAQTSLDSTSEKTQVTVLGVPDPPG 632

  Fly   691 NVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQ---RREVSELGPVPDPLLNWITELSNVSAD 752
            |:   .|.|.|.||:.:||..|.|.||.||::|::   .||  |.|       .| .||:.|..:
Mouse   633 NL---HLSERQNRSVRLSWEAGDDHNSKISEYIVEFEGNRE--EPG-------KW-EELTRVQGE 684

  Fly   753 QRWILLENLKAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQW 817
            :..::| :|.....|||||:|||.||....|.||:..|.|..||...|......|....|:|.:|
Mouse   685 ETDVVL-SLAPYVRYQFRVTAVNEVGRSHASLPSDHHETPPAAPDKNPQNIRVQASQPKEMIIKW 748

  Fly   818 QPPLEEHRNGQILGYILRYRLFGYNNVP--WSYQNITNEAQRNFLIQELITWKDYIVQIAAYNNM 880
            :|.....:||..|.|.:.::..|   .|  |..:.:||...|   :.....:..|.|::.|.|.:
Mouse   749 EPLKSMEQNGPGLEYKVSWKPQG---APEEWEEEIVTNHTLR---VMTPTVYAPYDVKVQAINQL 807

  Fly   881 GVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQ-RRLI 944
            |.....:...:.:.|..|...|...:|:.:|||..:..|:....:.::|:.:||:|..|: :.|:
Mouse   808 GSSPDPQPVTLYSGEDYPSTAPVIQRVDVMNSTLVKVTWSSIPKETVHGLLRGYQINWWKTKSLL 872

  Fly   945 DGEWRDIE--------RRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQV 1001
            ||.....|        :|...:.||| ||             |:|::::||.:...|.|..|...
Mouse   873 DGRTHPKEVNILRFSGQRNSGMVPSL-DP-------------FSEFHLTVLAYNSKGAGPESEPY 923

  Fly  1002 AVMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDT-----LKSFNL 1061
            ...|.:.||::.:.|....|...:..:.|..|:..||.||||.::||:.:  ||     |...|:
Mouse   924 IFQTPEGVPEQPSFLKVIKVDKDTATLSWGLPKKLNGNLTGYLLQYQIIN--DTYELGELNEINV 986

  Fly  1062 TA-DDTELTVNQLQATTHYWFEIVAWTRVGSGIP---KTATI---QSGVEPVLPHAPTALALSNI 1119
            |. ..:...::.|.:||.|.|.:.|.|..|.|.|   :.||:   ..|:..:.........:..:
Mouse   987 TTPSKSSWHLSNLNSTTKYKFYLRACTSRGCGKPISEEGATLGEGSKGIRKITEGVNVTQKIHPV 1051

  Fly  1120 E-----AFSVVLQFTPGFDGNSSITKWKVE 1144
            |     |..:|...|..:..|.||.:..:|
Mouse  1052 EVLVPGAEHIVHLMTKNWGDNDSIFQDVIE 1081

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046 16/79 (20%)
Ig 280..344 CDD:409353 15/63 (24%)
Ig strand B 280..283 CDD:409353 1/2 (50%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 2/3 (67%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 21/97 (22%)
Ig strand B 378..382 CDD:409353 1/3 (33%)
Ig strand C 391..395 CDD:409353 1/3 (33%)
Ig strand E 416..420 CDD:409353 0/3 (0%)
Ig strand F 430..435 CDD:409353 2/4 (50%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 23/85 (27%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 1/4 (25%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 15/92 (16%)
Ig strand B 608..612 CDD:409353 1/3 (33%)
Ig strand C 623..627 CDD:409353 0/5 (0%)
Ig strand E 648..652 CDD:409353 2/4 (50%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 41/105 (39%)
FN3 798..893 CDD:238020 21/96 (22%)
FN3 901..1005 CDD:238020 28/112 (25%)
FN3 <960..>1261 CDD:442628 52/201 (26%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
Chl1XP_006505530.1 Ig 35..126 CDD:472250 25/104 (24%)
Ig strand B 53..57 CDD:409396 0/16 (0%)
Ig strand C 66..70 CDD:409396 0/3 (0%)
Ig strand E 90..94 CDD:409396 0/3 (0%)
Ig strand F 106..111 CDD:409396 2/4 (50%)
Ig strand G 120..123 CDD:409396 2/2 (100%)
IgI_2_L1-CAM_like 135..225 CDD:409432 14/89 (16%)
Ig strand A 135..138 CDD:409432 0/2 (0%)
Ig strand A' 140..144 CDD:409432 0/3 (0%)
Ig strand B 147..155 CDD:409432 0/7 (0%)
Ig strand C 162..168 CDD:409432 1/5 (20%)
Ig strand C' 171..174 CDD:409432 0/2 (0%)
Ig strand D 180..184 CDD:409432 0/3 (0%)
Ig strand E 186..190 CDD:409432 1/3 (33%)
Ig strand F 201..209 CDD:409432 2/7 (29%)
Ig strand G 212..225 CDD:409432 0/12 (0%)
Ig 262..344 CDD:472250 18/89 (20%)
Ig strand B 274..278 CDD:409394 1/3 (33%)
Ig strand C 287..291 CDD:409394 0/5 (0%)
Ig strand E 309..313 CDD:409394 2/3 (67%)
Ig strand F 323..328 CDD:409394 2/4 (50%)
Ig strand G 336..339 CDD:409394 1/2 (50%)
Ig4_L1-NrCAM_like 348..435 CDD:409367 19/89 (21%)
Ig strand B 364..368 CDD:409367 1/3 (33%)
Ig strand C 377..381 CDD:409367 1/3 (33%)
Ig strand E 400..404 CDD:409367 0/5 (0%)
Ig strand F 414..419 CDD:409367 2/4 (50%)
Ig strand G 427..430 CDD:409367 1/2 (50%)
Ig 448..525 CDD:472250 22/77 (29%)
Ig strand B 457..461 CDD:409390 1/3 (33%)
Ig strand C 470..474 CDD:409390 0/3 (0%)
Ig strand E 493..497 CDD:409390 2/3 (67%)
Ig strand F 507..512 CDD:409390 2/4 (50%)
Ig strand G 520..523 CDD:409390 0/2 (0%)
IG_like 548..624 CDD:214653 14/76 (18%)
Ig strand B 548..552 CDD:409440 1/3 (33%)
Ig strand C 565..569 CDD:409440 0/3 (0%)
Ig strand E 588..594 CDD:409440 3/5 (60%)
FN3 <591..>868 CDD:442628 87/296 (29%)
Ig strand F 604..609 CDD:409440 2/4 (50%)
Ig strand G 617..620 CDD:409440 0/2 (0%)
FN3 628..717 CDD:238020 39/102 (38%)
FN3 833..927 CDD:238020 27/107 (25%)
FN3 932..1027 CDD:238020 28/96 (29%)
Bravo_FIGEY 1121..1206 CDD:464016
Blue background indicates that the domain is not in the aligned region.

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