DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and Cntn1

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_476459.1 Gene:Cntn1 / 117258 RGDID:621300 Length:1021 Species:Rattus norvegicus


Alignment Length:1086 Identity:252/1086 - (23%)
Similarity:427/1086 - (39%) Gaps:170/1086 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 QAPRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRWLKDGVPVGDFSSSQFYRF-------HS 127
            :.|..|.:|..|    .||... |.|.|...|.|.|:|..:...| |.::.::...       :.
  Rat    45 EQPINTIYPEES----LEGKVS-LNCRARASPFPVYKWRMNNGDV-DLTNDRYSMVGGNLVINNP 103

  Fly   128 TRREDAGSYQCIARNDAGSIFSEKSDVVVAYMGIF--ENTTEGRLTVISGHPAIFDMPPIESIPV 190
            .:::|||.|.|:|.|:.|.:.|.::.:...|:..|  |:..|.::....|...:.| ||......
  Rat   104 DKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEDRPEVKVKEGKGMVLLCD-PPYHFPDD 167

  Fly   191 PSVMWQSEDGP--LNYDIKYAFTHAN-QLIILSADENDRKGYRAKAINTQLGKEESSAFVHL--- 249
            .|..|...:.|  :..|.:...:..| .|.|.:.:.:||..|.....:..:.|...|.|:.|   
  Rat   168 LSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVESSDRGNYSCFVSSPSITKSVFSKFIPLIPI 232

  Fly   250 -NVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQCIANARPLHELETLWLK------DGLAVETA 307
             ..:..||   ..:|:|:.:|:...:|..|. |:|.|...|:.::.  |.|      ....:.|:
  Rat   233 PERTTKPY---PADIVVQFKDIYTMMGQNVT-LECFALGNPVPDIR--WRKVLEPMPTTAEISTS 291

  Fly   308 GVRHTLNDPWNRTLALLQANSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFG 372
            |.          .|.:........|.|.|:.....|   .....||:.:...|.:...:. :|..
  Rat   292 GA----------VLKIFNIQLEDEGLYECEAENIRG---KDKHQARIYVQAFPEWVEHIN-DTEV 342

  Fly   373 EFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAIN 437
            :.|..:...|...|:|.|.::|.:|.           |..: ...|.:..:..::|.|:||:|.|
  Rat   343 DIGSDLYWPCVATGKPIPTIRWLKNG-----------YAYH-KGELRLYDVTFENAGMYQCIAEN 395

  Fly   438 EAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIM 502
            ..|...|:..|::                                             .|.||..
  Rat   396 AYGTIYANAELKI---------------------------------------------LALAPTF 415

  Fly   503 ELPP--QNVTALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDA 565
            |:.|  :.:.|..|....|.|:...:|.|..:|......||: |||:.|.|.|.|.|:||...|.
  Rat   416 EMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVN-SSRILIWEDGSLEINNITRNDG 479

  Fly   566 GLYICVRANEAGSVKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREG 630
            |:|.|...|..|.......|.:...|:||..|::..:.:|..||:||..|.|||:.....|...|
  Rat   480 GIYTCFAENNRGKANSTGTLVITNPTRIILAPINADITVGENATMQCAASFDPSLDLTFVWSFNG 544

  Fly   631 ------QSSTPISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPP 689
                  :..|.|...:...:.|:|:|.|:..:....|.|.|...:...|.:.:|.|.|...|.||
  Rat   545 YVIDFNKEITNIHYQRNFMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPP 609

  Fly   690 SNVKVERLPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSADQR 754
            ..:::|.:   :..|:.::|:.|.|.:|||||:.||.:.:     :.|...:..|:...:..:  
  Rat   610 GGLRIEDI---RATSVALTWSRGSDNHSPISKYTIQTKTI-----LSDDWKDAKTDPPIIEGN-- 664

  Fly   755 WILLENLKAATV-----YQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEII 814
               :|:.||..:     |:|||.|.|.:|.|.||.|||.::....||:..|....|...:..|:.
  Rat   665 ---MESAKAVDLIPWMEYEFRVVATNTLGTGEPSIPSNRIKTDGAAPNVAPSDVGGGGGTNRELT 726

  Fly   815 TQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQE--LITWKDYIVQIAAY 877
            ..|.|...|:..|...|||:.::.|  :...|....:||.....::.::  :.....:.|::.|:
  Rat   727 ITWAPLSREYHYGNNFGYIVAFKPF--DGEEWKKVTVTNPDTGRYVHKDETMTPSTAFQVKVKAF 789

  Fly   878 NNMGVGVYTEGSKIKTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQINGINQGYKIQAWQRR 942
            ||.|.|.|:..:.|.:.:..|...||.|.|:.::|:.....|    ...:..|.:.|:|:.|.  
  Rat   790 NNKGDGPYSLIAVINSAQDAPSEAPTEVGVKVLSSSEISVHW----KHVLEKIVESYQIRYWA-- 848

  Fly   943 LIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMD 1007
               |..::.......|...      |.:|.|..|...|:|.|.|......|.|.:|..:...|..
  Rat   849 ---GHDKEAAAHRVQVTSQ------EYSARLENLLPDTQYFIEVGACNSAGCGPSSDVIETFTRK 904

  Fly  1008 DVPDEVTGLHFDDVSDRSVKVLW--APPRASNGILTGYTVRYQVKDRPDTL---KSFNLTADDTE 1067
            ..|.:...:.....|.....:.|  ....::...:|||.:.|    |||..   |.|:......|
  Rat   905 APPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKILY----RPDGQHDGKLFSTHKHSIE 965

  Fly  1068 LTVNQLQATTHYWFEIVAWTRVGSG------IPKTATIQSGVEPVL 1107
            :.:.:   ...|..|:.|.:..|.|      |...:|:.||:..:|
  Rat   966 VPIPR---DGEYVVEVRAHSDGGDGVVSQVKISGVSTLSSGLLSLL 1008

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 24/92 (26%)
I-set 72..150 CDD:254352 23/84 (27%)
Ig 172..245 CDD:299845 15/75 (20%)
IG_like 280..356 CDD:214653 15/81 (19%)
Ig 280..343 CDD:299845 12/68 (18%)
IG_like 375..450 CDD:214653 18/74 (24%)
Ig 378..447 CDD:143165 16/68 (24%)
Ig 506..587 CDD:299845 27/82 (33%)
IG_like 506..587 CDD:214653 27/82 (33%)
I-set 592..682 CDD:254352 26/95 (27%)
Ig 595..682 CDD:299845 24/92 (26%)
FN3 686..789 CDD:238020 33/107 (31%)
FN3 798..893 CDD:238020 22/96 (23%)
FN3 901..1005 CDD:238020 23/103 (22%)
fn3 1011..1094 CDD:278470 17/93 (18%)
FN3 1108..1202 CDD:238020 252/1086 (23%)
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
Cntn1NP_476459.1 IgI_1_Contactin-1 40..134 CDD:409436 24/94 (26%)
Ig strand B 61..65 CDD:409436 1/4 (25%)
Ig strand C 74..78 CDD:409436 1/3 (33%)
Ig strand E 96..100 CDD:409436 0/3 (0%)
Ig strand F 111..116 CDD:409436 2/4 (50%)
Ig strand G 125..128 CDD:409436 1/2 (50%)
Ig2_Contactin-2-like 142..230 CDD:409392 18/88 (20%)
Ig strand B 154..158 CDD:409392 0/3 (0%)
Ig strand C 169..173 CDD:409392 1/3 (33%)
Ig strand E 194..198 CDD:409392 1/3 (33%)
Ig strand F 208..213 CDD:409392 1/4 (25%)
Ig strand G 224..227 CDD:409392 1/2 (50%)
IgI_3_Contactin-1 241..328 CDD:143259 20/102 (20%)
Ig strand B 259..263 CDD:143259 2/4 (50%)
Ig strand C 272..276 CDD:143259 0/5 (0%)
Ig strand E 293..297 CDD:143259 1/13 (8%)
Ig strand F 307..312 CDD:143259 2/4 (50%)
Ig strand G 320..323 CDD:143259 0/2 (0%)
Ig 332..408 CDD:416386 19/88 (22%)
Ig strand A 332..335 CDD:409353 0/2 (0%)
Ig strand A' 339..343 CDD:409353 1/3 (33%)
Ig strand B 347..355 CDD:409353 1/7 (14%)
Ig strand C 361..366 CDD:409353 1/4 (25%)
Ig strand C' 368..371 CDD:409353 1/13 (8%)
Ig strand E 374..379 CDD:409353 1/4 (25%)
Ig strand F 388..395 CDD:409353 4/6 (67%)
Ig strand G 399..408 CDD:409353 2/8 (25%)
Ig5_Contactin-1 413..501 CDD:409438 29/88 (33%)
Ig strand B 432..436 CDD:409438 1/3 (33%)
Ig strand C 445..449 CDD:409438 0/3 (0%)
Ig strand E 467..471 CDD:409438 2/3 (67%)
Ig strand F 481..486 CDD:409438 2/4 (50%)
Ig strand G 494..497 CDD:409438 0/2 (0%)
Ig6_Contactin 503..603 CDD:409359 27/99 (27%)
Ig strand B 522..526 CDD:409359 2/3 (67%)
Ig strand C 537..541 CDD:409359 0/3 (0%)
Ig strand E 568..572 CDD:409359 2/3 (67%)
Ig strand F 582..587 CDD:409359 2/4 (50%)
Ig strand G 595..598 CDD:409359 0/2 (0%)
FN3 612..699 CDD:238020 28/99 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 695..719 8/23 (35%)
FN3 711..803 CDD:238020 21/93 (23%)
fn3 813..895 CDD:394996 22/96 (23%)
FN3 907..991 CDD:238020 18/90 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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