DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and prtg

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_004912757.1 Gene:prtg / 100496178 XenbaseID:XB-GENE-922463 Length:1173 Species:Xenopus tropicalis


Alignment Length:1380 Identity:278/1380 - (20%)
Similarity:503/1380 - (36%) Gaps:322/1380 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 IVRPQDVKVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTLALLQA-- 326
            :..||||.:.....|| |.|:||...  .:...|:|:|:.:.......||:   |.:|.:.:|  
 Frog    33 VKEPQDVIILRRDSVV-LDCLANGEA--PITVTWMKNGVKISENERISTLH---NGSLYIREAEG 91

  Fly   327 ---NSSHSGEYTCQVRLRSGGYPAVSASARLQILEPPLF-FTPMRAETFGEFGGQVQLTCDVVGE 387
               :.|..|.|.|....:.|.  .:|..|.|.......| ..|:..:.  :.|...:.:|.:...
 Frog    92 RKGDQSDEGFYQCLALNKFGA--ILSQRAHLSFASMSGFEEQPVSVQV--QHGSVARFSCKITAN 152

  Fly   388 PTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAG-ENSASTWLRVK 451
            |...:.|..|..::...::  |.|:.:...|.|..:...||..::|:|.:.:. ..|....|.|.
 Frog   153 PPAVITWEVNRTALPLAMD--RITVLSKGVLQIYGVTKRDAGNYRCVATSVSNRRKSTEAVLTVV 215

  Fly   452 TKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKD 516
            .....|....|:|.: |.:||                   ||.::...|::..||||:|....:.
 Frog   216 PGERLNPRHHLSQTQ-LTLRA-------------------KEKKYFQKPVIIAPPQNITTSMHQS 260

  Fly   517 ATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRANEAGS--- 578
            .|:.|.|.|:|.|.::|...:.:.:|:.: .:::.:|:|:||:::...:|:||| ||...|:   
 Frog   261 VTLECVATGNPKPIVSWSRRDHKPIDVFN-TRVVGNGNLIISDVKPHHSGVYIC-RATTPGTRNF 323

  Fly   579 VKGEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIG 643
            ......::||......:.|...|:....||...|:...:| || .|.|.:.||.   |:::.||.
 Frog   324 TVAMTTVTVLAPPSFTEWPASLTMPRASTARFVCQAEGNP-VP-KISWLKNGQK---INSNGRIK 383

  Fly   644 VQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLPEPQQRSINVS 708
            :. :.:|.|..:...|...|.|:..:..|:....|||.|:.....||..:..|.......:|.:|
 Frog   384 MY-NSKLVISHIMPEDDAVYQCMAENSQGSVLSRARLIVVMYEHRPSAPRQLRAETMSSSAIILS 447

  Fly   709 WTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSADQRWILLENLKAATVYQFRVSA 773
            |......:..|..:.:...:...|......::        :..|....::::|..|:.:.|.|.|
 Frog   448 WERPLYNSEKIIAYSVHYMKAEGLNNEEYQVV--------IGNDTTHYIIDDLDPASNFTFYVVA 504

  Fly   774 VNRVGEGSPSE---PSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILR 835
            ...:|....|:   .|.:.::|..||.     ...::||.::::..|.|...:.|.|:|:.|.|.
 Frog   505 YMPMGASQMSDHVTQSTLEDVPLRAPE-----ISLTSRSPTDVLISWLPISAKFRRGKIIHYRLS 564

  Fly   836 YRLFGYNNVPWSYQNITNEAQ-----RNFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKIKTKE 895
            ||:        |.:|.|:..:     ..:.::.|.:...|:|:|||...:|.|..:..:..:|.:
 Frog   565 YRM--------STENTTHNVELPGSTHEYFLEGLNSDTLYLVRIAAATKVGWGESSAWTSHRTPK 621

  Fly   896 G----VPEAPPTNVKVEAINSTAARCRW--TPPNPQQINGINQGYKIQAWQRRLIDGEWRDIERR 954
            .    .|.:|  .::::.:|.|....||  .|.:...|.|....||                |..
 Frog   622 STSIRAPRSP--ELRLDPLNCTTITVRWQQDPDDTATIQGYKLYYK----------------EEG 668

  Fly   955 MKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQ-VAVMTMDDVPDEVT---- 1014
            .:...|.|:| :.:....:|||:...:|::.:|.:.:..:|..:.| |:.......||.|.    
 Frog   669 QQESGPVLLD-VKDFDYNIGGLDPRKKYHVRLLAYNNMDEGYQADQTVSTPVCVSAPDHVNPPPP 732

  Fly  1015 ---GLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDTLKSFNLTADDTELTVNQLQAT 1076
               .|:....|..|:.:.|..|..|:.....||||.......:......|...::.:.:..|:|.
 Frog   733 PPHHLYAKANSSSSIYLHWGRPAFSSAKAINYTVRCNPVGLQNASLVLYLQTTESHILLQDLEAN 797

  Fly  1077 THYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSITKW 1141
            ..|.|.:.....:.|........||.:....|..|..:.::.||..:.::.:.|..:.:|::|.:
 Frog   798 KKYEFAVRLHVDLLSSPWSPVVYQSTLPDAPPRPPVGVKVTLIEENTALVSWKPPEELDSAVTSY 862

  Fly  1142 KVEGQTARNMTWFTICEINDPDAE--------TLTVT---GLVPFTQYRLRLSASNVVGSSKPSE 1195
            .:. .|:|. :|..        .|        |:|:.   .|:|...|.:::||:|..|..    
 Frog   863 TIL-YTSRK-SWIA--------GEWQIMHREGTMTMALLENLLPGNIYLVKISAANEAGEG---- 913

  Fly  1196 ATKDFQTIQARPKHPPFNVTVRAM--SAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIK 1258
                           ||:..|..:  |.:.|||                                
 Frog   914 ---------------PFSNVVELVVESKENLRV-------------------------------- 931

  Fly  1259 YVPRSVVI-----EDHTANSHVLDSLEEWTLYEVKMNACNDVGC-----------SKESDTAVER 1307
             |.||..:     ||:::..|    |::.::..:.:..|..:.|           ||....::.:
 Frog   932 -VTRSKQLDSGHREDYSSFYH----LDQKSMTGIVVGVCIALTCILICVLILIYRSKARKASIAK 991

  Fly  1308 TREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNG--QIDGYKVFYAAADRGQQVLHKTIPNN 1370
            |.:..|...|     :||:|       ....||.|..  |::|                      
 Frog   992 TAQQEPHLLP-----HATAS-------APTDRQERKATDQVEG---------------------- 1022

  Fly  1371 ATFTTTLTELKKYVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIW 1435
                                           ||.|:       .|.|.|| .|.|.......:|.
 Frog  1023 -------------------------------STGPL-------IPSVESN-HFIDAKGGSNLVIN 1048

  Fly  1436 DV-PVDPNGKILAYQVTYTLNGS----------AMLNYSREFPPSDRTFRATELL------PGKY 1483
            .. ||..|.|.......:..|||          ||..|.    |.:|.....:|.      ||.|
 Frog  1049 GYGPVKNNTKKSWPFFKHNKNGSVEQPNKRIVKAMCLYQ----PGNRVLIGEDLSPASPGNPGTY 1109

  Fly  1484 YSFSCTAQTRLGWGKIATALVYTTNNRERPQAPSVPQISR---SQIQAHQITFSWTPGRDGFAPL 1545
            ...:..|.|.           ::.|:.|..:.....:.|.   .:|..:.:....||..|.|.  
 Frog  1110 KMRNSIADTE-----------HSGNSDESHETSDSGRFSHESTDEIHLYSVVCPTTPTSDSFT-- 1161

  Fly  1546 RYYTVEMRENEGRWQ 1560
               :.:.|:|...::
 Frog  1162 ---SNDCRQNSALYE 1173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046
Ig 280..344 CDD:409353 16/68 (24%)
Ig strand B 280..283 CDD:409353 1/2 (50%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 1/3 (33%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 17/92 (18%)
Ig strand B 378..382 CDD:409353 0/3 (0%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 1/3 (33%)
Ig strand F 430..435 CDD:409353 1/4 (25%)
Ig strand G 443..446 CDD:409353 1/2 (50%)
Ig 502..587 CDD:472250 24/87 (28%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 0/3 (0%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 3/4 (75%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 24/89 (27%)
Ig strand B 608..612 CDD:409353 1/3 (33%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 1/3 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 17/105 (16%)
FN3 798..893 CDD:238020 22/99 (22%)
FN3 901..1005 CDD:238020 22/106 (21%)
FN3 <960..>1261 CDD:442628 59/321 (18%)
fn3 1317..1402 CDD:394996 9/86 (10%)
FN3 1415..1507 CDD:238020 25/108 (23%)
FN3 1513..1608 CDD:238020 8/51 (16%)
FN3 1583..>2011 CDD:442628
prtgXP_004912757.1 Ig 30..121 CDD:472250 25/95 (26%)
Ig strand B 47..51 CDD:409353 3/4 (75%)
Ig strand C 60..64 CDD:409353 0/3 (0%)
Ig strand E 82..86 CDD:409353 1/3 (33%)
Ig strand F 101..106 CDD:409353 2/4 (50%)
Ig strand G 115..118 CDD:409353 1/2 (50%)
Ig 128..214 CDD:472250 17/89 (19%)
Ig strand B 143..147 CDD:409353 0/3 (0%)
Ig strand C 156..160 CDD:409353 0/3 (0%)
Ig strand E 179..183 CDD:409353 1/3 (33%)
Ig strand F 193..198 CDD:409353 1/4 (25%)
Ig strand G 207..210 CDD:409353 1/2 (50%)
Ig_3 243..316 CDD:464046 23/74 (31%)
I-set 336..421 CDD:400151 24/90 (27%)
Ig strand B 353..357 CDD:409353 1/3 (33%)
Ig strand C 366..370 CDD:409353 1/3 (33%)
Ig strand E 387..391 CDD:409353 1/3 (33%)
Ig strand F 401..406 CDD:409353 2/4 (50%)
Ig strand G 414..417 CDD:409353 0/2 (0%)
FN3 428..521 CDD:238020 16/100 (16%)
FN3 529..619 CDD:238020 24/102 (24%)
FN3 628..708 CDD:238020 20/98 (20%)
FN3 <687..>925 CDD:442628 52/266 (20%)
FN3 829..920 CDD:238020 22/119 (18%)
Blue background indicates that the domain is not in the aligned region.

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