DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and igdcc3

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_002938404.3 Gene:igdcc3 / 100489799 XenbaseID:XB-GENE-922404 Length:764 Species:Xenopus tropicalis


Alignment Length:808 Identity:184/808 - (22%)
Similarity:288/808 - (35%) Gaps:240/808 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 VRPQDVKVKVGTGVVELQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTLALLQANSS 329
            |.|.| :|.|....:.|.|.|:.  :..:..:|.|:|..:            ||...||...|.:
 Frog    33 VEPSD-EVAVPGQPLTLFCSADG--VQPITIIWRKNGSPI------------WNEAHALPLPNGT 82

  Fly   330 ------HS---------GEYTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQ 379
                  ||         |||.|....|.|.  .||..||:|......|:. ...:|..|.||..:
 Frog    83 LYIPLFHSVQEDEPSDQGEYDCVAHNRFGS--VVSRKARVQTAVMSDFYI-FPQDTTLEEGGVAR 144

  Fly   380 LTCDVVGEPTPQVKWFRNAESVDAHIESGRYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSA 444
            ..|.:.|.|.|::.|.||.|.:|.  |:.||||.....|.|..|..:|...::|:|.|.||    
 Frog   145 FQCQIRGLPEPEIVWERNGEMIDT--ENLRYTLLPTGVLQITALRSEDTGTYRCVATNAAG---- 203

  Fly   445 STWLRVKTKTAKNRVKRLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNV 509
                 ||...:..          |.|..||:         :|..|          |::.:.|:|:
 Frog   204 -----VKYSPSAT----------LIVTDSHS---------TGYKD----------PMILVGPENL 234

  Fly   510 TALDGKDATISCRAVGSPNPNITWIYNETQLVDISSRVQILESGDLLISNIRSVDAGLYICVRAN 574
            |....:.|.:.|.|.|:|.|.::|...:.:.:.:.. :|::.:|:|:||::....:|:|:|. ||
 Frog   235 TKTVHQTAILECMATGNPRPIVSWSRLDGRPIGVEG-IQVVGNGNLMISDLTVHHSGVYVCA-AN 297

  Fly   575 EAGS-VK--GEAYLSVLVRTQIIQPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTP- 635
            :.|: |:  .:..|.|....:.:|.|...|..:|.||...|....:|  |..|.|.:.||...| 
 Frog   298 KPGTRVRRTAQGRLVVQAPAEFVQHPQSITRPVGTTAIFTCLAQGEP--PPQITWLKNGQELEPS 360

  Fly   636 ----ISNSQRIGVQADGQLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVER 696
                :.|:       :..|.|..:...|...|.||..:..|:...:|||||:             
 Frog   361 GHIKLKNN-------NSSLTISGISQEDEAIYQCVAKNSAGSSQASARLSVL------------- 405

  Fly   697 LPEPQQRSINVSWTPGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSADQRWILLENL 761
                        |..|                                                 
 Frog   406 ------------WAEG------------------------------------------------- 409

  Fly   762 KAATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPVGFVGSARSMSEIITQWQPPLEEHRN 826
                                         ||     |||.....:..|.:.|...|..|||..| 
 Frog   410 -----------------------------LP-----GPPQDIRATTASSTSIHVSWSKPLENTR- 439

  Fly   827 GQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITWKDYIVQIAAYNNMGVGVYTEGSKI 891
             :|:||::..|... :.:...||...::.....|:.:|.....|...|.||.:.|....:...:.
 Frog   440 -EIIGYVVHIRKTA-DPIQMEYQEAVSKDTFQQLVTDLEPSTTYSFYIKAYTSRGASKASANVQQ 502

  Fly   892 KTKEGVPEAPPTNVKVEAINSTAARCRWTPPNPQQIN-GINQGYKIQAWQRRLIDGEWRDIERRM 955
            .|...||..|...:||  :||||.:..|.|    .|. |.|:|:|:.                 .
 Frog   503 STLGEVPAVPSLYIKV--LNSTAIQAAWEP----SIKLGQNEGFKLY-----------------Y 544

  Fly   956 KTVP-PSLIDPL---AEQTAI-LGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVPDE-VT 1014
            :.|| |....|:   :..||. :..|:....|.:.:|.|...|||  :|.|..:::.:.... |.
 Frog   545 RKVPTPDYTGPMLLPSNVTAYNISRLDPLVVYEVKLLAFNQHGDG--NSTVRFVSLKEASARAVL 607

  Fly  1015 GLHFDDVSDRSVKVLWAPPRASNGILTG 1042
            ....:.|||..     .|..::.||:.|
 Frog   608 NPSCNCVSDEQ-----RPKSSTTGIIIG 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046
Ig 280..344 CDD:409353 18/78 (23%)
Ig strand B 280..283 CDD:409353 1/2 (50%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 0/3 (0%)
Ig strand F 333..338 CDD:409353 3/4 (75%)
Ig 360..451 CDD:472250 28/90 (31%)
Ig strand B 378..382 CDD:409353 0/3 (0%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 1/3 (33%)
Ig strand F 430..435 CDD:409353 1/4 (25%)
Ig strand G 443..446 CDD:409353 0/2 (0%)
Ig 502..587 CDD:472250 23/87 (26%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 0/3 (0%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/4 (0%)
Ig 592..682 CDD:472250 25/94 (27%)
Ig strand B 608..612 CDD:409353 1/3 (33%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 1/3 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 2/102 (2%)
FN3 798..893 CDD:238020 23/94 (24%)
FN3 901..1005 CDD:238020 29/109 (27%)
FN3 <960..>1261 CDD:442628 21/88 (24%)
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
igdcc3XP_002938404.3 Ig 29..121 CDD:472250 28/104 (27%)
Ig strand B 46..50 CDD:409387 1/3 (33%)
Ig strand C 59..63 CDD:409387 0/3 (0%)
Ig strand E 81..85 CDD:409387 0/3 (0%)
Ig strand F 101..106 CDD:409387 3/4 (75%)
Ig strand G 115..118 CDD:409387 1/2 (50%)
Ig 132..214 CDD:472250 30/102 (29%)
Ig strand B 143..147 CDD:409389 0/3 (0%)
Ig strand C 156..160 CDD:409389 0/3 (0%)
Ig strand E 179..183 CDD:409389 1/3 (33%)
Ig strand F 193..198 CDD:409389 1/4 (25%)
Ig strand G 207..210 CDD:409389 0/2 (0%)
IG_like 231..308 CDD:214653 22/78 (28%)
Ig strand B 242..246 CDD:409544 1/3 (33%)
Ig strand C 255..259 CDD:409544 0/3 (0%)
Ig strand E 277..281 CDD:409544 2/3 (67%)
Ig strand F 291..296 CDD:409544 2/5 (40%)
I-set 318..404 CDD:400151 25/94 (27%)
Ig strand B 334..338 CDD:409543 1/3 (33%)
Ig strand C 347..351 CDD:409543 1/3 (33%)
Ig strand E 370..374 CDD:409543 1/3 (33%)
Ig strand F 384..389 CDD:409543 2/4 (50%)
Ig strand G 397..400 CDD:409543 0/2 (0%)
FN3 411..504 CDD:238020 24/100 (24%)
fn3 509..589 CDD:394996 26/102 (25%)
Blue background indicates that the domain is not in the aligned region.

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