DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and il6st

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_012822352.2 Gene:il6st / 100489642 XenbaseID:XB-GENE-855663 Length:939 Species:Xenopus tropicalis


Alignment Length:750 Identity:173/750 - (23%)
Similarity:278/750 - (37%) Gaps:190/750 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   897 VPEAPPTNVKVE-------AINST-----AARCRWTPPNPQQINGINQGYKIQAWQRRLIDGEWR 949
            ||:  |..|.:|       .||.|     |:|..|      ::.||           ::.:.:::
 Frog    32 VPD--PNFVHLEKPFTAQCIINETCLKEDASRIIW------RVKGI-----------KVPETQYK 77

  Fly   950 DIERRMKTV----PPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVAVMTMDDVP 1010
            .:...:.:|    |.:|:.||.....:.|.:|: |.|.|   .||            |....|.|
 Frog    78 VVNHTVSSVTFENPATLVSPLTCSVLVSGQVEQ-TLYGI---FFT------------VALPPDQP 126

  Fly  1011 DEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDTLKSFNLTAD-DTELTVNQLQ 1074
            ..:|.:.:   :..::...|.|.|.:| :.|.||:.::       .....|||: .:||..|:::
 Frog   127 KNLTCVAY---NQDNLTCTWDPGRPTN-LNTNYTLMHR-------WNPLALTAERGSELVQNKVK 180

  Fly  1075 ATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGFDGNSSIT 1139
            :..........||     :||             |..|     |.|...:   |......|..|.
 Frog   181 SLPSARARGRKWT-----LPK-------------HGYT-----NSEGDQM---FRANIQKNYCIP 219

  Fly  1140 KWKVEGQTARNMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSEATKDFQTIQ 1204
            |   |...:        |.:..||.:.        |.....::.|.|.:||.:....|.|...| 
 Frog   220 K---ESNNS--------CTVRYPDFQF--------FVDTTFQVEAKNELGSQESEVLTVDPVNI- 264

  Fly  1205 ARPKHPPFNVTVRAMS-AQQLRVRWIPLQQTEWYGNPRG-----YNISYKQLVKTPGTIKYVPRS 1263
            .:|..|..:..:.|:. ...|:::|         .||..     |||.|:       .||.....
 Frog   265 VKPNPPQLSDLISAVELPNALKIKW---------KNPINAFKLKYNIRYR-------PIKNQDWE 313

  Fly  1264 VVIEDHTA---NSHVLDSLEEWTLYEVKMNACNDVG---CSKESDTAVERTREAVPSYGPLDVQA 1322
            :|.|:.||   :|..|..|..:|.|||.:....:.|   .|..|:...:.|.||.||.|| ||..
 Frog   314 MVPEEDTASHRDSFTLQDLLPYTEYEVSIRCIKEDGRGFWSDWSEVKKQVTPEAQPSRGP-DVWK 377

  Fly  1323 N-----ATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNATFTTTLTELKK 1382
            |     |..:..|.:.|..:.....||:|..|.|.:.:  |.|.   ||.  |.|.|:....|.|
 Frog   378 NVDSPDADGNRDVTIMWKALGDSVANGKILLYGVTFQS--RSQS---KTF--NVTETSYKISLSK 435

  Fly  1383 YVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGVPSN----VSFPDVSL------TMARIIWDV 1437
            .:.| |.|.||    |...::||.::       .:|.:    |..|::|:      ....:.|: 
 Frog   436 EINY-VSVTAY----NSRFASPPAKL-------NIPRSGSCQVLAPELSVKAYPKEEQLWVEWN- 487

  Fly  1438 PVDPN--GKILAYQVTYTLNGSAMLNYSREFPPSDRTFRATELLPGKYYSFSCTAQTRLGWGKIA 1500
            |.:.|  |.|:.:...|...|... ::.||...:..||...||.|.|.|........:.|...:|
 Frog   488 PQNKNLDGYIIEWCNKYAKEGCDS-DWQREPRSAQSTFLRGELEPLKCYLIKVYQLFKDGCESVA 551

  Fly  1501 TALVYTTNNRERPQAPSV-PQISRSQIQAHQITFSWTP----GRDGFAPLRYYTVEMRENEGRWQ 1560
            ....|....     .||| |.:...|::.::....|||    .::||  ::.||:..:.:.|...
 Frog   552 AVEAYLQQG-----TPSVGPSVHTKQVEKYKAILQWTPVPFDKQNGF--IKNYTLTYKASHGNET 609

  Fly  1561 PLPERVDPSLSSFTAVGLRPYMTYQFRIQATNDLG 1595
            .|.  :||..:.:|..||.....|...:.|..:.|
 Frog   610 TLV--IDPLDTEYTLSGLDGNTLYSVHMVAYTEKG 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653
Ig 378..447 CDD:143165
Ig 506..587 CDD:299845
IG_like 506..587 CDD:214653
I-set 592..682 CDD:254352
Ig 595..682 CDD:299845
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020 24/119 (20%)
fn3 1011..1094 CDD:278470 16/83 (19%)
FN3 1108..1202 CDD:238020 19/93 (20%)
FN3 1210..1308 CDD:238020 26/109 (24%)
fn3 1317..1402 CDD:278470 27/89 (30%)
FN3 1415..1507 CDD:238020 23/103 (22%)
FN3 1513..1608 CDD:238020 21/87 (24%)
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
il6stXP_012822352.2 Lep_receptor_Ig 26..109 CDD:399379 19/95 (20%)
FN3 128..>164 CDD:419708 8/46 (17%)
FN3 267..360 CDD:238020 27/108 (25%)
FN3 562..642 CDD:214495 21/83 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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