DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and dscam

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_031751619.1 Gene:dscam / 100216449 XenbaseID:XB-GENE-921689 Length:2039 Species:Xenopus tropicalis


Alignment Length:2427 Identity:523/2427 - (21%)
Similarity:867/2427 - (35%) Gaps:744/2427 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 VQQQQLQAPRFTTHPSSSGSIVSEGSTKILQCHALGYPQPTYRW-LKDGVPVGD----------- 116
            |..:.|.|..:..:.|....:.:..:..::.|.|.|.|..|.|| |..|..:.|           
 Frog    15 VSSEDLHASLYFVNASLQEVVFASTTGTLVPCPAGGIPPVTLRWYLATGEEIYDVPGIRHVHHNG 79

  Fly   117 ------FSSSQFYR-FHSTRREDAGSYQCIARNDAGSIFSEKSDV-------------------- 154
                  |..|.|.. .|.      .:|.|.|.|.:|.|.|:...:                    
 Frog    80 TLQIFPFPPSSFNNLIHD------NTYYCTAENPSGKIRSQDVHIKAVLREPYTVRVDDQKAMRG 138

  Fly   155 -VVAYMGIFENTTEGRLTVISGHPAIFDMPPIESIPVPSVMWQSEDGPLNYDIKYAFTHANQLII 218
             .|.:..|..::.|..:||:|                    |:.:...|....::..|....|.|
 Frog   139 NAVVFKCIIPSSVEAYVTVVS--------------------WEKDTVSLVSGSRFLITSTGALYI 183

  Fly   219 LSA-DENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVELQ 282
            ... :|:....||....:...|:...|....|.|| || ...||.||...:..|...|.. |||.
 Frog   184 ADVQNEDGLNNYRCTTRHKYTGETRQSNSARLTVS-DP-ANSAPSIIDGFEHHKAMAGER-VELP 245

  Fly   283 CIANARPLHELETLWLKDGLAVE-TAGVRHTLNDPWNRTLALLQANS--SHSGEYTCQVRLRSGG 344
            |.|:..|:.:..  |||:.:.:| .:..:||:       :.||..|:  |.||.|.|:|....|.
 Frog   246 CKASGHPIPKYR--WLKNNVLLEPDSRFQHTV-------VGLLIENTRPSDSGSYVCEVWNNYGN 301

  Fly   345 YPAVSASARLQILEP-PLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFRNAESVDAHIESG 408
            ...:.:   |.:.:| .:..:|.:.::  ..|.|:.|.|.|.|...|.:.|:||.|.::|. .:.
 Frog   302 AEVIGS---LYVKQPLKVNISPRKVKS--SVGSQISLACSVTGTDDPDLSWYRNGEIINAG-NNV 360

  Fly   409 RYTLNTDNTLVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVKRLAQPRILRVRAS 473
            |.|.....||::..:...|:..:||....|  :.||..:::|        |.....|:|:     
 Frog   361 RITGVNRETLIMDGMAKSDSGAYQCFVRRE--KMSAQDYVQV--------VLEDGTPKII----- 410

  Fly   474 HAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVGSPNPNITWIYNET 538
                       |..|::                   ....|:..::.|...|:|.|.|||..::.
 Frog   411 -----------SAFSEK-------------------VVSPGEPVSLMCNVKGTPLPTITWTLDDD 445

  Fly   539 QLV-DISSRVQ--ILESGDLL----ISNIRSVDAGLYICVRANEAGSVKGEAYLSVLVRTQIIQP 596
            .:: :.:.|:.  |...|:::    |:|.:..|.|:|.|...|.||.|..:|.::|..... |:|
 Frog   446 PIIKNGNHRISQLITSEGNVVSYLNITNTQVRDGGVYRCTANNSAGVVLYQARINVRGPAS-IRP 509

  Fly   597 PVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPISNSQRIGVQADGQLEIQAVRAS-DV 660
            ..:.|.:.|....:.|:|...|.  |:|.||:  .|:....|.:::..:.:|.|::..|:.. |.
 Frog   510 MKNITAIAGRDTYIHCRVIGYPY--YSIKWYK--NSNLLPFNHRQVAFENNGTLKLSDVQKDVDE 570

  Fly   661 GSYACVV-------TSPGGNET----------RAARLSVIELPFPPSNVKVERLPEPQQRSINVS 708
            |.|.|.|       ||...:.|          .:.|.|:.:..|.|..|....||      |.::
 Frog   571 GEYMCNVLVQPQLSTSQSVHVTVKVPPFIQPFESQRFSIGQRVFIPCVVVSGDLP------ITIT 629

  Fly   709 WTPGFDGNSPISKFIIQRREVSELGPVPDPL------LNWITEL--SNVSADQRWILLENLKAAT 765
            |..  ||.                 |:|..|      :::.:.|  ||:|      |:.|.....
 Frog   630 WQK--DGR-----------------PIPASLGVTIDNIDFTSSLRISNLS------LMHNGNYTC 669

  Fly   766 VYQFRVSAVNRVGEGSPSEPSNVVELPQE-------------APSGPPVGFVGSARSMSEIITQW 817
            :.:...:||....:.....|...|..|.:             :..|.||..:....|....:.|:
 Frog   670 IARNDAAAVEHQSQLIVRVPPRFVVQPTDQDGIYGKAVILNCSAEGYPVPTIVWKYSKGAGVPQF 734

  Fly   818 QPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITWKD---YIVQIAAYNN 879
            ||..   .||:|                   |.:||   .:.||:.::. :|   |:.:::  |:
 Frog   735 QPIA---LNGRI-------------------QLLTN---GSLLIKHVLE-EDSGYYLCKVS--ND 771

  Fly   880 MGVGVYTEGSKIKTKEGVPEAPPTNVKVEAI-----NSTAARCRWTPPNPQQINGINQGYK--IQ 937
            :|.             .|.::....||:.|:     |:|.|    |....::::....|.|  |.
 Frog   772 VGA-------------DVSKSMYLTVKIPAMITSYPNTTLA----TQGQKKEMSCTAHGEKPIIV 819

  Fly   938 AWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVLCFTDPGDGVASSQVA 1002
            .|::          |.||..||                  :.:.|.:|.   .:.|:.|.|:...
 Frog   820 RWEK----------EDRMINVP------------------EMSRYLVST---KEVGEEVISTLQI 853

  Fly  1003 VMTMDDVPDEVTGLHFDDVSDRSVKVLWAPPRASNGILTGYTVRYQVKDRPDTLKSFNLTADDTE 1067
            :.|:                           |..:|..:.:.:           .||.......:
 Frog   854 LPTV---------------------------REDSGFFSCHAI-----------NSFGEDRGIIQ 880

  Fly  1068 LTVNQLQATTHYWFEIVAWTRVGSGIPKTATIQSGVEPVLPHAPTALALSNIEAFSVVLQFTPGF 1132
            |||.:                                   |..|..:.:..:.|.|:.|::|.||
 Frog   881 LTVQE-----------------------------------PPDPPEIEIREVRARSIALRWTMGF 910

  Fly  1133 DGNSSITKWKVEGQTARNMTWFTICEIND--PDAETLTVTGLVPFTQYRLRLSASNVVGSSKPS- 1194
            ||||.||.:.:|.:. ::.:|.::....|  |.....|:..|.|.:.|.:|:.|.|.:|.|:.| 
 Frog   911 DGNSPITGYDIECKN-KSDSWDSVQRTKDVSPQLNQATIIDLHPASTYNIRMYAKNRIGKSEASN 974

  Fly  1195 EATKDFQTIQARPKHPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKY 1259
            |.|  ..|.:|.|..||..|.:..:|:|.:||.|...::....|..|||.|.::: ..|.|..::
 Frog   975 ELT--ITTEEAAPDGPPQEVQLDPISSQSIRVTWKAPKKHLQNGIIRGYKIGFRE-YSTGGNYQF 1036

  Fly  1260 VPRSVVIEDHTANSHV--LDSLEEWTLYEVKMNACNDVGCSKESDTAVERTREAVPSYGPLDVQA 1322
               :::..|.|.:|.|  ||:|:::|.|.|.:.|||..|....|...:..|.|.|||..|.:|||
 Frog  1037 ---NIIDVDTTGDSEVYTLDNLKKFTQYGVVVQACNRAGTGPSSQEIITTTLEDVPSRSPENVQA 1098

  Fly  1323 NATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAA----ADRGQQVLHKTIPNNATFTTTLTE---L 1380
            ::||..|:.:.|....::..||.:.|::|.|.|    .:.|:       ..|.|.|..|.|   |
 Frog  1099 SSTSPETITISWSTPSKEALNGILQGFRVIYWANLMDGELGE-------IKNVTTTQPLLELDNL 1156

  Fly  1381 KKYVVYHVQVLAYTRLGNGALSTPPIRVQTFEDTPGVPSNVSFPDVSLTMARIIWDVPVDPNGKI 1445
            :||..|.:||||:||.|:|..| ..|..:|.||.||..:.|.....|.:...:.|..|:.|||.|
 Frog  1157 EKYTNYSIQVLAFTRAGDGVRS-EQIFTRTKEDVPGPTAGVKAAAASASTVYVSWLPPLKPNGII 1220

  Fly  1446 LAYQVTYTLNGSAMLNYSREFP---------PSDRTFRATELLPGKYYSFSCTAQTRLGWGKIAT 1501
            ..|          |:..|..:|         |....:|...|...:.||....|.|..|.|..:.
 Frog  1221 RKY----------MVFCSHPYPTVISDFEAAPDSFFYRIPSLSRNRQYSVWVVAVTAAGRGNSSD 1275

  Fly  1502 ALVYTTNNRERPQAPSVPQISRSQIQAHQITFSWTPG----RDGFAPLRYY-----TVE-MRENE 1556
            .:             :|..::::  .|..:|||.|..    ||...|.:..     ||: |:|:.
 Frog  1276 II-------------TVEPVAKA--PARILTFSGTVTTPWMRDIVLPCKAVGDPSPTVKWMKESN 1325

  Fly  1557 GRWQPLPERVDPSL------------SSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVI---V 1606
            |         .|||            .||....::...:..:...|||..|    |.|.|:   |
 Frog  1326 G---------TPSLVMIDGRRSIYSNGSFIIRTVKAEDSGYYSCIATNSWG----SDEIVLNLQV 1377

  Fly  1607 RTLPAAPAVGVGGLKVVPITTTSVRVQWSALETALWNGDASTGGYRILY-----QQLSDFPTALQ 1666
            :..|..|.     |.|...|::|:.:.|:..:    ||.:|..||.:.|     :|...||.   
 Frog  1378 QVPPDQPR-----LTVSKTTSSSITLSWTPGD----NGGSSIRGYILQYSEDNSEQWGSFPI--- 1430

  Fly  1667 STPKTDVHGINENSVVLSDLQQDRNYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGEPRAVDAAP 1731
             :|       :|.|..|.:|:....|:..:...|..|||..:.     :.||...|:...|.:.|
 Frog  1431 -SP-------SERSYRLENLKCGTWYKFTLTAQNGVGPGRISE-----IIEAKTLGKGTGVLSCP 1482

  Fly  1732 ISSTEVRLLWKPPKQSMQNGDILGYKIYYLVTYSPQALEPGRKWEEEIEVVSATATSHSLVFLDK 1796
            ..:      .||                              ::.:|.::|::|.|         
 Frog  1483 SKA------GKP------------------------------QFSKEQDLVASTNT--------- 1502

  Fly  1797 FTEYRIQLLAFNPAGDGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLEVTWDPPKFLNGEILGY 1861
             |..|:.|:.:|..|     .|||                      |..:.:.|          :
 Frog  1503 -TRVRLNLIGWNDGG-----CPIT----------------------SFNLEYRP----------F 1529

  Fly  1862 LVTYETTEENEKFSKQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISE---NVTTGPQ 1923
            ..|..|..:....||         :..:.:|:|.:.|...:|...|.    |.:|   ..:|...
 Frog  1530 GTTVWTLAQRTSLSK---------SYILYDLQEAMWYELQMRVCNSA----GCAEKQATFSTLNY 1581

  Fly  1924 DGSPVAPRDLILTKTLSSVEMHWINGPSGR----------GPILGY---LIEAKKRDDSRWTKIE 1975
            |||.:.|    |.|::.:.|....|....:          |.:|.:   ||..::|.:.|..::.
 Frog  1582 DGSTIPP----LVKSVEASEEGMSNNKGIKMLVTISCILIGVLLLFALLLIVRRRRREQRLKRLR 1642

  Fly  1976 QTRKGMMQDFTVSYHILMPSTAYT--FRVIAYNRYGISFPVYSKDSILTPSKLHLEYGYLQHKPF 2038
            .. |.:.:       :||.:...|  .:.|..:.:|......:.|::.....|.:.         
 Frog  1643 DA-KSLAE-------MLMRANLLTTCCKSILSDLHGRDKNTRTSDTLNKQQTLRMH--------- 1690

  Fly  2039 YRQTWFMVSLAATSIVIIVMVIAVLCVKSKSYKYKQEAQKTLEESMAMSIDERQELAL------E 2097
                   :.:....::|                   |.:.|:|     :||:|..:.|      |
 Frog  1691 -------IDIPRAQLLI-------------------EERDTME-----TIDDRSTVLLTDADFGE 1724

  Fly  2098 LYRSR-----HGV-------GTGTLNSVGTLRSGTLGTLGRKSTSRPPPGVHLGKSP---PRPSP 2147
            ..:.:     |.|       .||.|..|...|.||..|. ||:....|...:...|.   .||.|
 Frog  1725 SSKQKSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTT-RKNAKAGPAARNRYASQWTLNRPHP 1788

  Fly  2148 ASVAYHS----------------DEESLKCYDENPDDSSVTEKPSEVSSSEASQHSESENESVRS 2196
             :::.|:                |:|| ..|..:|...:...:.|.||:..||...|   |..|:
 Frog  1789 -TISAHTLTTDWRLPTPRAAGSVDKES-DSYSVSPSQDTDRARSSMVSTESASSTYE---ELARA 1848

  Fly  2197 DPHSFVNHYANVNDSLR--------------QSWKKTKPVRNYS-SYTDSEPEGSAV-------- 2238
            ..|      |.:.:.||              .|.:.|.....|: |.|.|.|..|.:        
 Frog  1849 YEH------AKMEEQLRHAKFTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTASPP 1907

  Fly  2239 MSLNGGQIIVNNMARSRAPLPG 2260
            ..|:||:  |..||..:|..||
 Frog  1908 KPLDGGK--VQTMAAPKAHRPG 1927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845 23/125 (18%)
I-set 72..150 CDD:254352 21/96 (22%)
Ig 172..245 CDD:299845 11/73 (15%)
IG_like 280..356 CDD:214653 22/78 (28%)
Ig 280..343 CDD:299845 20/65 (31%)
IG_like 375..450 CDD:214653 22/74 (30%)
Ig 378..447 CDD:143165 20/68 (29%)
Ig 506..587 CDD:299845 22/87 (25%)
IG_like 506..587 CDD:214653 22/87 (25%)
I-set 592..682 CDD:254352 25/107 (23%)
Ig 595..682 CDD:299845 24/104 (23%)
FN3 686..789 CDD:238020 21/110 (19%)
FN3 798..893 CDD:238020 19/97 (20%)
FN3 901..1005 CDD:238020 21/110 (19%)
fn3 1011..1094 CDD:278470 7/82 (9%)
FN3 1108..1202 CDD:238020 30/96 (31%)
FN3 1210..1308 CDD:238020 30/99 (30%)
fn3 1317..1402 CDD:278470 32/91 (35%)
FN3 1415..1507 CDD:238020 23/100 (23%)
FN3 1513..1608 CDD:238020 27/119 (23%)
fn3 1617..1708 CDD:278470 24/95 (25%)
FN3 1722..1823 CDD:238020 17/100 (17%)
FN3 1828..1920 CDD:238020 13/94 (14%)
FN3 1927..2016 CDD:238020 17/103 (17%)
dscamXP_031751619.1 Ig 26..121 CDD:416386 22/100 (22%)
Ig strand A' 33..37 CDD:409353 0/3 (0%)
Ig strand B 40..49 CDD:409353 1/8 (13%)
Ig strand C 55..61 CDD:409353 3/5 (60%)
Ig strand C' 63..66 CDD:409353 1/2 (50%)
Ig strand D 72..75 CDD:409353 0/2 (0%)
Ig strand E 80..85 CDD:409353 0/4 (0%)
Ig strand F 98..106 CDD:409353 3/7 (43%)
Ig strand G 109..121 CDD:409353 3/11 (27%)
Ig 124..217 CDD:416386 17/112 (15%)
Ig strand A' 127..136 CDD:409353 0/8 (0%)
Ig strand B 140..147 CDD:409353 1/6 (17%)
Ig strand C 157..162 CDD:409353 3/24 (13%)
Ig strand C' 164..167 CDD:409353 0/2 (0%)
Ig strand D 172..176 CDD:409353 0/3 (0%)
Ig strand E 179..185 CDD:409353 2/5 (40%)
Ig strand F 193..201 CDD:409353 2/7 (29%)
Ig strand G 205..217 CDD:409353 3/11 (27%)
Ig strand A 225..228 CDD:409353 1/2 (50%)
Ig strand A' 234..237 CDD:409353 1/2 (50%)
IG_like 236..310 CDD:214653 24/86 (28%)
Ig strand B 242..249 CDD:409353 4/6 (67%)
Ig strand C 255..260 CDD:409353 1/6 (17%)
Ig strand C' 262..264 CDD:409353 0/1 (0%)
Ig strand D 270..274 CDD:409353 0/3 (0%)
Ig strand E 276..280 CDD:409353 1/3 (33%)
Ig strand F 289..297 CDD:409353 4/7 (57%)
Ig strand G 300..310 CDD:409353 2/12 (17%)
Ig 313..395 CDD:416386 23/86 (27%)
Ig strand A 314..319 CDD:409353 0/4 (0%)
Ig strand A' 322..326 CDD:409353 0/5 (0%)
Ig strand B 329..339 CDD:409353 4/9 (44%)
Ig strand C 344..350 CDD:409353 1/5 (20%)
Ig strand C' 351..354 CDD:409353 1/2 (50%)
Ig strand E 368..374 CDD:409353 2/5 (40%)
Ig strand F 381..389 CDD:409353 2/7 (29%)
Ig 406..501 CDD:416386 26/129 (20%)
Ig strand A 406..409 CDD:409353 1/2 (50%)
Ig strand A' 415..419 CDD:409353 0/22 (0%)
Ig strand B 422..431 CDD:409353 1/8 (13%)
Ig strand C 436..442 CDD:409353 4/5 (80%)
Ig strand C' 444..447 CDD:409353 0/2 (0%)
Ig strand D 452..460 CDD:409353 1/7 (14%)
Ig strand E 464..473 CDD:409353 1/8 (13%)
Ig strand F 480..488 CDD:409353 3/7 (43%)
Ig strand G 491..501 CDD:409353 3/9 (33%)
Ig 504..593 CDD:416386 23/93 (25%)
Ig strand A 505..507 CDD:409353 0/2 (0%)
Ig strand A' 512..516 CDD:409353 1/3 (33%)
Ig strand B 519..526 CDD:409353 0/6 (0%)
Ig strand C 533..539 CDD:409353 3/5 (60%)
Ig strand C' 540..542 CDD:409353 0/1 (0%)
Ig strand D 549..553 CDD:409353 0/3 (0%)
Ig strand E 557..563 CDD:409353 2/5 (40%)
Ig strand F 571..579 CDD:409353 4/7 (57%)
Ig strand G 583..593 CDD:409353 2/9 (22%)
Ig 596..686 CDD:416386 22/120 (18%)
Ig strand A 597..599 CDD:409353 0/1 (0%)
Ig strand A' 604..608 CDD:409353 1/3 (33%)
Ig strand B 611..620 CDD:409353 2/8 (25%)
Ig strand C 625..632 CDD:409353 3/12 (25%)
Ig strand C' 634..636 CDD:409353 1/18 (6%)
Ig strand D 643..648 CDD:409353 0/4 (0%)
Ig strand E 651..658 CDD:409353 1/6 (17%)
Ig strand F 665..673 CDD:409353 0/7 (0%)
Ig strand G 676..685 CDD:409353 2/8 (25%)
Ig_DSCAM 689..784 CDD:409397 23/135 (17%)
Ig strand B 707..711 CDD:409397 0/3 (0%)
Ig strand C 720..724 CDD:409397 0/3 (0%)
Ig strand E 749..753 CDD:409397 0/3 (0%)
Ig strand F 763..768 CDD:409397 1/4 (25%)
Ig strand G 777..780 CDD:409397 0/2 (0%)
Ig_DSCAM 785..885 CDD:409398 28/172 (16%)
Ig strand B 805..809 CDD:409398 0/3 (0%)
Ig strand C 818..822 CDD:409398 1/3 (33%)
Ig strand E 849..853 CDD:409398 1/3 (33%)
Ig strand F 863..868 CDD:409398 0/4 (0%)
Ig strand G 876..879 CDD:409398 0/2 (0%)
FN3 886..980 CDD:238020 30/96 (31%)
FN3 987..1084 CDD:238020 30/100 (30%)
FN3 1093..1185 CDD:238020 34/99 (34%)
FN3 1190..1279 CDD:238020 23/111 (21%)
Ig_3 <1303..1364 CDD:404760 13/69 (19%)
Ig strand B 1304..1311 CDD:409353 1/6 (17%)
Ig strand C 1317..1322 CDD:409353 2/4 (50%)
Ig strand C' 1327..1333 CDD:409353 3/5 (60%)
Ig strand D 1337..1341 CDD:409353 0/3 (0%)
Ig strand E 1343..1347 CDD:409353 2/3 (67%)
Ig strand F 1356..1364 CDD:409353 1/7 (14%)
Ig strand G 1367..1377 CDD:409353 4/13 (31%)
FN3 1381..1471 CDD:238020 28/114 (25%)
FN3 1497..1568 CDD:238020 22/130 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.