DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and ncam2

DIOPT Version :10

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_012811963.1 Gene:ncam2 / 100151722 XenbaseID:XB-GENE-1217730 Length:865 Species:Xenopus tropicalis


Alignment Length:706 Identity:168/706 - (23%)
Similarity:285/706 - (40%) Gaps:150/706 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 LIILSADENDRKGYRAKAINTQLGKEESSAFVHLNVSGDPYIEVAPEIIVRPQDVKVKVGTGVVE 280
            |.|..|:.:|...||.:|.:::...:|::..:.:      |.::..|.:..||:.|....   .|
 Frog   107 LTIYKANVDDAGIYRCQATDSKGHAQEATVVLEI------YQKLTFEDVPSPQEFKRGEN---AE 162

  Fly   281 LQCIANARPLHELETLWLKDGLAVETAGVRHTLNDPWNRTLALLQANS--------SHSGEYTCQ 337
            :.|:.::.|...:.  ||.:         |..:.|..:|..|:|..|:        ...|.|.|:
 Frog   163 VLCLVSSSPAPMVR--WLNN---------REDVTDIDDRRFAMLPNNNLQIKNISKRDEGIYRCE 216

  Fly   338 VRLRSGG---YPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQ---LTCDVVGEPTPQVKWFR 396
            .|:...|   :..:|....:    ||......|  :|.....:::   |.|...|.|.|.:.|.|
 Frog   217 GRVEVRGEIDFRDISVIVNV----PPEILAQQR--SFNATADRLEDITLFCRATGSPKPYITWHR 275

  Fly   397 NAESVDAHIESGRYTLNTDNT-LVIKKLILDDAAMFQCLAINEAGENSASTWLRVKTKTAKNRVK 460
            |.:.|:   |:.:|.|..||| |.:|.:|..|:.::.|.|.|:||.....::|:|          
 Frog   276 NGKLVE---ENEKYDLREDNTELTVKNIISTDSGLYVCRATNKAGFTEKQSFLQV---------- 327

  Fly   461 RLAQPRILRVRASHAGLGSEKGSESGSSDRRKEFRFASAPIMELPPQNVTALDGKDATISCRAVG 525
             ..||.|:::                                    ||.|.::....|::|.|.|
 Frog   328 -FVQPHIVQL------------------------------------QNETTIEHGHVTLTCEAEG 355

  Fly   526 SPNPNITWIYNETQLV----DISSRVQILESG-----DLLISNIRSVDAGLYICVRANEAGSVKG 581
            .|.|.|||..:...::    |.|...:|..:|     .|.|.::...|||.|.|..|:..|..:.
 Frog   356 EPIPEITWKRSSDGMIFYDGDKSQDGRIESTGHHGKSSLHIKSVMLSDAGRYDCEAASRIGGHQK 420

  Fly   582 EAYLSV-----LVRTQII-----QPPVDTTVLLGLTATLQCKVSSDPSVPYNIDWYREGQSSTPI 636
            ..||::     .:..|.|     ..|::          :.|.|:|:|  |.:|.|.|: :...|.
 Frog   421 SMYLNIEYAPKFISNQTIYYSWENNPIN----------ISCDVTSNP--PSSIYWSRD-KLLLPA 472

  Fly   637 SNSQRIGVQADGQ---LEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLP 698
            .|...|....||:   |||..:..:|.|.|.|...:..|:..:...|::.::|..|..::|..| 
 Frog   473 RNITNIKTYRDGKRILLEITPLSDNDFGRYNCTAINSIGSRIQEYILTLADVPSSPYGLRVIEL- 536

  Fly   699 EPQQRSINVSWT-PGFDGNSPISKFIIQRREVSELGPVPDPLLNWITELSNVSADQRWILLENLK 762
              .|....|.:. |...|..||..:.:..:|||          :.|.::......|..|:|.||.
 Frog   537 --SQTYAKVFFNKPDSHGGVPIHHYQMDFKEVS----------SEIWKVVRSHGTQTIIVLGNLD 589

  Fly   763 AATVYQFRVSAVNRVGEGSPSEPSNVVELPQEAPSGPPV-GFVGSARSMSEIITQWQPPLEEHRN 826
            |.|.|:.:|:|||..|:|..|:......||...||.|.: |..|..:|....||:     ::...
 Frog   590 ANTTYEVKVAAVNGKGKGEYSKTEIFQTLPVREPSPPSIHGQPGGGKSFKLSITK-----QDDGG 649

  Fly   827 GQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQELITWK-DYIVQIAAYNNMG 881
            ..||.|:::||.....: .|..:...  ..::::|.:.:.|. .|.|.|.|.|.:|
 Frog   650 APILNYVVKYRSKDKED-QWLEKKFL--GNKDYIILDHLQWNVGYEVHIIATNRLG 702

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig_3 72..142 CDD:464046
Ig 280..344 CDD:409353 15/71 (21%)
Ig strand B 280..283 CDD:409353 1/2 (50%)
Ig strand C 292..298 CDD:409353 0/5 (0%)
Ig strand E 319..323 CDD:409353 1/3 (33%)
Ig strand F 333..338 CDD:409353 2/4 (50%)
Ig 360..451 CDD:472250 28/94 (30%)
Ig strand B 378..382 CDD:409353 1/6 (17%)
Ig strand C 391..395 CDD:409353 0/3 (0%)
Ig strand E 416..420 CDD:409353 3/4 (75%)
Ig strand F 430..435 CDD:409353 1/4 (25%)
Ig strand G 443..446 CDD:409353 0/2 (0%)
Ig 502..587 CDD:472250 27/93 (29%)
Ig strand B 517..521 CDD:409353 1/3 (33%)
Ig strand C 530..534 CDD:409353 2/3 (67%)
Ig strand E 554..557 CDD:409353 1/2 (50%)
Ig strand F 567..572 CDD:409353 2/4 (50%)
Ig strand G 580..583 CDD:409353 0/2 (0%)
Ig 592..682 CDD:472250 25/97 (26%)
Ig strand B 608..612 CDD:409353 0/3 (0%)
Ig strand C 623..627 CDD:409353 1/3 (33%)
Ig strand E 648..652 CDD:409353 2/6 (33%)
Ig strand F 662..667 CDD:409353 2/4 (50%)
Ig strand G 675..678 CDD:409353 0/2 (0%)
FN3 686..789 CDD:238020 29/103 (28%)
FN3 798..893 CDD:238020 20/86 (23%)
FN3 901..1005 CDD:238020
FN3 <960..>1261 CDD:442628
fn3 1317..1402 CDD:394996
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
FN3 1583..>2011 CDD:442628
ncam2XP_012811963.1 Ig 50..142 CDD:472250 8/40 (20%)
Ig strand B 67..71 CDD:409452
Ig strand C 79..83 CDD:409452
Ig strand E 105..109 CDD:409452 1/1 (100%)
Ig strand F 119..124 CDD:409452 2/4 (50%)
Ig strand G 133..136 CDD:409452 1/2 (50%)
IG_like 150..234 CDD:214653 20/97 (21%)
Ig strand B 161..165 CDD:409353 1/3 (33%)
Ig strand C 174..178 CDD:409353 0/5 (0%)
Ig strand E 198..202 CDD:409353 1/3 (33%)
Ig strand F 212..217 CDD:409353 2/4 (50%)
Ig 238..327 CDD:472250 28/93 (30%)
Ig strand B 257..261 CDD:409301 1/3 (33%)
Ig strand C 270..274 CDD:409301 0/3 (0%)
Ig strand E 293..297 CDD:409301 2/3 (67%)
Ig strand F 307..312 CDD:409301 1/4 (25%)
Ig strand G 320..323 CDD:409301 0/2 (0%)
Ig 329..426 CDD:472250 30/132 (23%)
Ig strand B 347..351 CDD:143278 1/3 (33%)
Ig strand C 360..364 CDD:143278 2/3 (67%)
Ig strand E 392..396 CDD:143278 1/3 (33%)
Ig strand F 406..411 CDD:143278 2/4 (50%)
Ig strand G 419..422 CDD:143278 0/2 (0%)
Ig_3 430..508 CDD:464046 23/90 (26%)
FN3 525..617 CDD:238020 29/104 (28%)
fn3 623..707 CDD:394996 22/88 (25%)
Blue background indicates that the domain is not in the aligned region.

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