DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and lrit3b

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:XP_009305418.1 Gene:lrit3b / 100144406 ZFINID:ZDB-GENE-070424-130 Length:487 Species:Danio rerio


Alignment Length:406 Identity:84/406 - (20%)
Similarity:139/406 - (34%) Gaps:86/406 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 TEGRLTVISGHPAIFDMPPIESIPVPSVMWQSEDGPLNYDIKYAFTHANQLIILSADENDRKGYR 230
            |:|..||:..:||:..:|  ..:|..:|.::.|...::...:.||:...:|:.|....|......
Zfish    66 TKGLRTVLCKNPALTAIP--IDLPNDTVKFRLERTSVSRIFRGAFSAMPELLYLWLTYNSISVLH 128

  Fly   231 AKAINTQLGKEESSAFVHLNVSGD-----PY--IEVAPEI---------IVRPQDVKVKVGTGVV 279
            .::. |.|     |:...|.:.|:     |:  :...|.:         :.|...:.|:....|.
Zfish   129 PRSF-TNL-----SSLHELRLDGNLLSTFPWEGLRDMPRLRTLGLHNNRLARIPLLAVRYLRNVT 187

  Fly   280 ELQCIAN--ARPLHELETLWL-KDGLAVETAGVRHTLNDPW---NRTLALLQANSSHSGE----- 333
            .|...:|  :...::|..||| .|....:.:.|....::||   .|...||..:......     
Zfish   188 YLDLSSNRLSTLANDLTALWLFSDSNQTQRSFVLGLQDNPWVCDCRLSTLLDISRGPESSLVLLD 252

  Fly   334 --YTCQVRLRSGGYPAVSASARLQILEPPLFFTPMRAETFGEFGGQVQLTCDVVGEPTPQVKWFR 396
              .||...|...|.|  ..|..|.....|...|.....| ...|..|.|.|:..|.|||.:.|.:
Zfish   253 RFLTCSEPLDLAGVP--FQSVELSRCRRPYVVTSATKIT-ALLGSTVLLRCEATGHPTPALMWIK 314

  Fly   397 NAE--------------SVDAH----------IESGRYTLNTDNTLVIKKLILDDAAMFQCLAIN 437
            :|:              |:|..          .||.|..:.. :.:.:..:...||..::|.|.|
Zfish   315 SAKRNLYNQGCCKQTQSSLDTERFPKKLFGYVQESPRVGVRW-SVVSLNGISYSDAGEYRCRAQN 378

  Fly   438 EAGENSASTWLRV------------------KTKTAKNRVKRLAQPRILRVRASHAGLGSEK--- 481
            .||.:.|...|.|                  .||:...|.|...:.:.:..|.....|...|   
Zfish   379 MAGISEAVVSLNVVGVMAEYTDFKNSDQQQTTTKSDSKRTKPKQKSKAMMPRNMTGSLSPLKRVL 443

  Fly   482 GSESGSSDRRKEFRFA 497
            .:.....|:.|..|.|
Zfish   444 KTPKAGRDKMKRDRTA 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845 14/72 (19%)
IG_like 280..356 CDD:214653 20/88 (23%)
Ig 280..343 CDD:299845 16/75 (21%)
IG_like 375..450 CDD:214653 24/98 (24%)
Ig 378..447 CDD:143165 22/92 (24%)
Ig 506..587 CDD:299845
IG_like 506..587 CDD:214653
I-set 592..682 CDD:254352
Ig 595..682 CDD:299845
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020
FN3 1210..1308 CDD:238020
fn3 1317..1402 CDD:278470
FN3 1415..1507 CDD:238020
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
lrit3bXP_009305418.1 LRRNT 51..92 CDD:214470 8/27 (30%)
leucine-rich repeat 69..89 CDD:275380 6/21 (29%)
LRR_8 112..172 CDD:290566 10/65 (15%)
leucine-rich repeat 114..137 CDD:275378 5/28 (18%)
leucine-rich repeat 138..161 CDD:275378 3/22 (14%)
LRR_8 160..214 CDD:290566 11/53 (21%)
LRR_4 160..201 CDD:289563 6/40 (15%)
leucine-rich repeat 162..185 CDD:275378 2/22 (9%)
leucine-rich repeat 186..199 CDD:275378 3/12 (25%)
leucine-rich repeat 215..230 CDD:275378 3/14 (21%)
Ig 278..391 CDD:299845 27/114 (24%)
I-set 279..391 CDD:254352 27/113 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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