DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sdk and il12rb2

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001106977.1 Gene:il12rb2 / 100134971 ZFINID:ZDB-GENE-080107-3 Length:792 Species:Danio rerio


Alignment Length:891 Identity:175/891 - (19%)
Similarity:293/891 - (32%) Gaps:259/891 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1149 RNMTWFTI--CEIND-PDAETLTVT-GLVPFTQYRLRLSASNVVGSSKPSEAT-KDFQTIQARPK 1208
            ||:|..:|  |:.|| |:...:.:| |..|.....|........|:...:..| :|         
Zfish    61 RNLTTLSIFTCKCNDNPEPCGIDITPGYPPNFPQNLTCIRKTEFGNVSCTWTTGRD--------- 116

  Fly  1209 HPPFNVTVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANS 1273
                   .:.::..||||:          |:|   :..|:.::.:.|..                
Zfish   117 -------TKIVTTCQLRVQ----------GDP---HHGYESVMNSSGFC---------------- 145

  Fly  1274 HVLDSLEEWTLYEVK---------MNACNDVGCSKESDTAVERTREAVPSYGPLD-------VQA 1322
                    |..:.:|         :|..|.:|    |:|:|:   .::|....:|       :..
Zfish   146 --------WATFPIKSRMSQLTVSLNVSNSLG----SNTSVQ---PSLPKIKHVDCSSRWCHLHT 195

  Fly  1323 NATSSTTVVVQWGEVPRQHRNGQIDGYKVFYAAADRGQQVLHKTIPNNATFTTTLTELKKYVVYH 1387
            :..|...|.||:.......:..||:|.|                       :..::.|:.|..|.
Zfish   196 DNHSMNLVEVQYKSPKGIWKKVQINGKK-----------------------SLNISLLEPYTKYM 237

  Fly  1388 VQVLAYTRLGNGALS--TPPIRVQTFEDTPGVPSNVSF-----PDVSLTMARIIW-DVPV-DPNG 1443
            .|:........|..|  :.....:|.|:.|....:..:     |..|....||.| ::.| |..|
Zfish   238 FQIRRKINQTMGLWSYWSQAKEAETKEEAPDKVLDFWYLRELKPSQSEKCFRIFWKELSVSDAKG 302

  Fly  1444 KILAYQVTYTLNGSAMLNYSREFPPSDRTFRATELLPGKYYSFSCTAQTRLGWGKIATALVYTTN 1508
            ||..|.:|.....      |||.....|  |..|.:.....|.|.:|...:|         .:..
Zfish   303 KIHQYDITVKKGN------SREIIVVPR--RINESICCSDCSVSVSAVNSMG---------QSPE 350

  Fly  1509 NRERPQAPSVPQ--ISRSQIQAHQITFSWTPGRDGFAPLRYYTVEMRENEGRWQPLPE------- 1564
            |..:.|.|.:..  :|...:..|.|..||        |.......:.|....|.|:.:       
Zfish   351 NFIKLQTPHLVSGFLSHKSLSNHSIALSW--------PRLAIAGNITEYVVHWYPVGDIEEIQWI 407

  Fly  1565 RVDPSLSSFTAVGLRPYMTYQFRIQATNDLGPSAFSRESVIVRTLPAAPAVGVGGLKVVPI---- 1625
            ||..:.::.|  ||||...:|..:.|....||.|.:::   :.|..:||..|       |:    
Zfish   408 RVVDTKANIT--GLRPQECFQGAVTALTSNGPVASNKD---LSTWQSAPEQG-------PVPQQV 460

  Fly  1626 --TTTSVRVQWSALETALWNGDASTGGYRILYQQLSDFPTALQSTPKTDVHGINEN----SVVLS 1684
              .|.|:.|:||.:.      ....||.      |..:...|....|.::|..:.:    ..::|
Zfish   461 KKKTESLIVKWSKIP------QEKRGGC------LKKYTVYLMDKSKGEIHHYSVDYPLTEYIIS 513

  Fly  1685 DLQQDRNYEIVVLPFNSQGPGPATPPAAVYVGEAVPTGEPRAVDAAPISSTEVRLLWKPPKQSMQ 1749
            .|...:.|.:.|..:...|.||.        |..:|...|        :.|| |||   ....:.
Zfish   514 GLSPGQCYNLWVTAWTDAGEGPR--------GSDLPFCTP--------TDTE-RLL---SLVILA 558

  Fly  1750 NGDILGYKIY-------------YLVTYSPQALEPGRKWEEEIEVVSATATSHSLVFLDKFTEYR 1801
            .|.:|.:.::             :|..:  |.|.|        .|:...|.|......||.....
Zfish   559 GGAVLFFCLFLICICQFSSVQRRFLSCF--QCLLP--------RVIPDPANSKCAKTYDKHPSQS 613

  Fly  1802 IQLLAFNPAG------DGPRSAPITVKTLPGVPSAPLHLRFSDITMQSLE-----VTWDPPKFLN 1855
            :.....:|.|      |...:..:....:.|:       ||:......|:     .|...|:.  
Zfish   614 LIHTGVSPLGFLVLKRDKNSTHHVQTLRITGI-------RFAQSICTRLKEPLRVATVAKPRL-- 669

  Fly  1856 GEILGYLVTYET--TEENEKFS-KQVKQKVSNTTLRVQNLEEEVTYTFTVRAQTSVDYGPGISEN 1917
             |||.||..|::  :||.|... ::|....|.|...:::..:|...:...:...:.|    |||:
Zfish   670 -EILFYLQQYDSSMSEEPENVEVEEVPYHPSFTCTYIKSFSQESDSSDATQITRNTD----ISED 729

  Fly  1918 V--TTGPQDGSPVAPRDLILTKTLSSVEMHWINGPSGRGPILGYLI 1961
            .  |.|...|......:   .|.:...|..:.  ||.|.|.|..|:
Zfish   730 YISTHGAISGGEEEEDE---EKEMGLDEFEFF--PSIRSPFLEPLV 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653
Ig 378..447 CDD:143165
Ig 506..587 CDD:299845
IG_like 506..587 CDD:214653
I-set 592..682 CDD:254352
Ig 595..682 CDD:299845
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020
FN3 901..1005 CDD:238020
fn3 1011..1094 CDD:278470
FN3 1108..1202 CDD:238020 15/57 (26%)
FN3 1210..1308 CDD:238020 16/106 (15%)
fn3 1317..1402 CDD:278470 14/91 (15%)
FN3 1415..1507 CDD:238020 23/98 (23%)
FN3 1513..1608 CDD:238020 23/103 (22%)
fn3 1617..1708 CDD:278470 19/100 (19%)
FN3 1722..1823 CDD:238020 20/119 (17%)
FN3 1828..1920 CDD:238020 22/101 (22%)
FN3 1927..2016 CDD:238020 8/35 (23%)
il12rb2NP_001106977.1 FN3 93..173 CDD:304408 18/136 (13%)
fn3 368..436 CDD:278470 17/77 (22%)
FN3 466..544 CDD:238020 19/97 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.