DRSC/TRiP Functional Genomics Resources

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Protein Alignment sdk and csf3r

DIOPT Version :9

Sequence 1:NP_001284756.1 Gene:sdk / 31017 FlyBaseID:FBgn0021764 Length:2265 Species:Drosophila melanogaster
Sequence 2:NP_001106848.1 Gene:csf3r / 100134935 ZFINID:ZDB-GENE-080104-4 Length:810 Species:Danio rerio


Alignment Length:721 Identity:158/721 - (21%)
Similarity:266/721 - (36%) Gaps:157/721 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   800 PVGFVGSARSMSEIITQWQPPLEEHRNGQILGYILRYRLFGYNNVPWSYQNITNEAQRNFLIQEL 864
            ||...||..|:|..|.: ..||.:   |::  :.:::|:.| ..||.:|....:....:.||..|
Zfish    34 PVVLAGSPVSVSCSIEE-DCPLTK---GKV--FYVQWRIDG-QVVPRTYTYQESNMTYSVLIPRL 91

  Fly   865 -ITWKDYIVQIAAYNNMGVGVYTEGSKIKTKEGVPEAPP------TNVKVEAINSTAARCRWTPP 922
             .|....:..:....:..:   .:|.::||  |.|..|.      |.||:.::     ||.|.| 
Zfish    92 QDTSASILCLV
CVQEDCQI---VDGVEVKT--GNPPVPQNLSCALTLVKMPSL-----RCDWNP- 145

  Fly   923 NPQQINGINQGYKIQAWQRRLIDGEWRDIERRMKTVPPSLIDPLAEQTAILGGLEKFTEYNISVL 987
             .|:|..:...|.:..::.:         .:::..|||.....:..:.|    ...|:|..||| 
Zfish   146 -VQEIKNLPINYTLHVFRAK---------SQKVYAVPPGQHFYVVPRDA----YGYFSELEISV- 195

  Fly   988 CFTDPGDGVASSQVAVMTMDDVPDEVTGLH---FDDVSDRSV--------KVLWAPPRASNGILT 1041
                    .|::.:...|.|  |.::|.|:   ||..|...:        |..|:.......:..
Zfish   196 --------TAANVLGNTTSD--PLKLTPLNTVKFDPPSITRIEAHKYGCLKYSWSLSETQKWLQL 250

  Fly  1042 GYTVRYQVKDRPDTLKSFNLTADDTELTVNQLQATTHYWFEIVAWTRVGSGI------------- 1093
            .:.|:.::|    |:.  |....|...|..|||........::.||...|.:             
Zfish   251 TFIVQLRLK----TVS--NQPNKDLVYTSRQLQLNPIEVCSLLHWTDYRSTVRVKYYATSEWSEW 309

  Fly  1094 --PKTATIQSGVEPVLPHAP-----TALALSNIEAFSVVLQFTPG--FDGNSSITKWKVEGQTAR 1149
              |||||       .|..||     |.|.::|..|   .|.:.|.  |..|.....:.|:.:..:
Zfish   310 SDPKTAT-------TLNKAPAGRLDTWLKVNNQTA---QLYWKPSQQFRANGQNLSYSVDSKDTK 364

  Fly  1150 NMTWFTICEINDPDAETLTVTGLVPFTQYRLRLSASNVVGSSKPSEATKDFQTIQARPKHPPFNV 1214
            .....|        .||.....|..:.: ::.|.|.|.||.|..:|.  .....:.:...|..|.
Zfish   365 KRLCVT--------TETYCFFSLTKWDK-KIFLRARNEVGFSDHNEV--PVAVHRNKGLEPVSNF 418

  Fly  1215 TVRAMSAQQLRVRWIPLQQTEWYGNPRGYNISYKQLVKTPGTIKYVPRSVVIEDHTANSHVLDSL 1279
            :|...|...|.|.|    ::..:.|...|.:.::.|..|..    .|.|..:.....::..|..|
Zfish   419 SVHPQSNTSLHVIW----KSPAFSNVTSYVLEWRSLCGTTA----APLSFTLIHKNKSNTTLTGL 475

  Fly  1280 EEWTLYEVKMNACNDVGCSKESDTAVERTREAVPSYGPLDVQANATSSTTVVVQWGEVPRQHRNG 1344
            |....||:.:......|..:.. |.:..:.|..||..| ::.....|.:.:...||::|.:.|||
Zfish   476 EPSKPYEISIYPRYVKGIGRPV-TVLAYSSETAPSDAP-ELNYEEISRSHLKFHWGQIPLEKRNG 538

  Fly  1345 QIDGYKVFYAAADRGQQVLHKTIPNNATFTTTLTELKKYVVYHVQVLAYTRLG--NGALSTPPIR 1407
            .|.||: ||...::.:   .|.|....| :..:.:|:.:..||..:...|:.|  ||:.||    
Zfish   539 IIQGYR-FYFWHNKNE---IKEIMTTET-SVEVKDLQPHTKYHALLSICTKGGCVNGSFST---- 594

  Fly  1408 VQTFEDTPG-------VPSNVSFPDVSLTMARII--------------WDVPVDP-NGKILAYQV 1450
             .|.|...|       :|:.:.   .||.:..|:              |.:..|| |..|..:..
Zfish   595 -LTTERLDGIEMVIFVIPACIG---ASLLVIIIVFTCFGKQERVKMCLWPIIPDPANSSIKRWTT 655

  Fly  1451 TYTLNG 1456
            |.:|.|
Zfish   656 TDSLQG 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sdkNP_001284756.1 Ig 71..157 CDD:299845
I-set 72..150 CDD:254352
Ig 172..245 CDD:299845
IG_like 280..356 CDD:214653
Ig 280..343 CDD:299845
IG_like 375..450 CDD:214653
Ig 378..447 CDD:143165
Ig 506..587 CDD:299845
IG_like 506..587 CDD:214653
I-set 592..682 CDD:254352
Ig 595..682 CDD:299845
FN3 686..789 CDD:238020
FN3 798..893 CDD:238020 20/93 (22%)
FN3 901..1005 CDD:238020 21/109 (19%)
fn3 1011..1094 CDD:278470 19/108 (18%)
FN3 1108..1202 CDD:238020 22/100 (22%)
FN3 1210..1308 CDD:238020 20/97 (21%)
fn3 1317..1402 CDD:278470 23/86 (27%)
FN3 1415..1507 CDD:238020 13/64 (20%)
FN3 1513..1608 CDD:238020
fn3 1617..1708 CDD:278470
FN3 1722..1823 CDD:238020
FN3 1828..1920 CDD:238020
FN3 1927..2016 CDD:238020
csf3rNP_001106848.1 Lep_receptor_Ig 25..102 CDD:283889 19/74 (26%)
FN3 414..494 CDD:214495 19/87 (22%)
FN3 508..597 CDD:238020 27/99 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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