DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpA and SK16

DIOPT Version :9

Sequence 1:NP_001033818.1 Gene:SkpA / 31016 FlyBaseID:FBgn0025637 Length:162 Species:Drosophila melanogaster
Sequence 2:NP_565297.1 Gene:SK16 / 814848 AraportID:AT2G03190 Length:170 Species:Arabidopsis thaliana


Alignment Length:166 Identity:64/166 - (38%)
Similarity:100/166 - (60%) Gaps:12/166 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIVPLPNVNSTILRKVLTWAHYHKDDP 68
            |.|.|||:|.|:.:..:|:....|..|::|    |..:..:||.||...||..|:.:...|..|.
plant     6 IVLTSSDDESFEVEEAVARKLKVIAHMIDD----DCADKAIPLENVTGNILALVIEYCKKHVLDD 66

  Fly    69 QPTEDDESK-------EKRTDDIISWDADFLK-VDQGTLFELILAANYLDIKGLLELTCKTVANM 125
            ....||.::       |:..:::.:|||:|:| .|..|:.:||||.|||:::.||.|||:|||:.
plant    67 VDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADH 131

  Fly   126 IKGKTPEEIRKTFNIKKDFSPAEEEQVRKENEWCEE 161
            :|..:|||:|:.|||:.|::|.||:.:||||.|..|
plant   132 MKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpANP_001033818.1 BTB_POZ_SKP1 4..126 CDD:349631 46/129 (36%)
Skp1 112..159 CDD:396171 24/46 (52%)
SK16NP_565297.1 SKP1 3..165 CDD:227528 62/162 (38%)
Skp1 3..117 CDD:214704 38/114 (33%)
Skp1 92..165 CDD:279768 38/72 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 51 1.000 Domainoid score I4316
eggNOG 1 0.900 - - E1_COG5201
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 166 1.000 Inparanoid score I1572
OMA 1 1.010 - - QHG54148
OrthoDB 1 1.010 - - D1412723at2759
OrthoFinder 1 1.000 - - FOG0000367
OrthoInspector 1 1.000 - - mtm992
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11165
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X346
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.940

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