Protein Alignment SkpA and Skp1

DIOPT Version :9

• Sequence 1: NP_001033818.1
• Gene: SkpA / 31016
• FlyBaseID: FBgn0025637
• Length: 162
• Species: Drosophila melanogaster
• Sequence 2: XP_038941314.1
• Gene: Skp1 / 287280
• RGDID: 1359648
• Length: 165
• Species: Rattus norvegicus
• Alignment Length: 163
• Identity: 124/163 - (76%)
• Similarity: 142/163 - (87%)
• Gaps: 1/163 - (0%)

  Fly     1 MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDD-ENAIVPLPNVNSTILRKVLTWAHYH 64
            ||:|||||||.|||:.|::|||.|.||||||||.||:|: ::..|||||||:.||:||:.|..:|
  Rat     3 MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHH 67

  Fly    65 KDDPQPTEDDESKEKRTDDIISWDADFLKVDQGTLFELILAANYLDIKGLLELTCKTVANMIKGK 129
            ||||.|.||||:||||||||..||.:|||||||||||||||||||||||||::||||||||||||
  Rat    68 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 132

  Fly   130 TPEEIRKTFNIKKDFSPAEEEQVRKENEWCEEK 162
            ||||||||||||.||:..||.||||||:|||||
  Rat   133 TPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK 165

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SkpA	NP_001033818.1	BTB_POZ_SKP1	4..126	CDD:349631	90/122 (74%)
		Skp1	112..159	CDD:396171	38/46 (83%)
Skp1	XP_038941314.1	BTB_POZ_SKP1	5..129	CDD:349631	90/123 (73%)
		Skp1	115..162	CDD:396171	38/46 (83%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166343140
Domainoid	1	1.000	89	1.000	Domainoid score	I7688
eggNOG	1	0.900	-	-		E1_COG5201
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H38775
Inparanoid	1	1.050	254	1.000	Inparanoid score	I3112
OMA	1	1.010	-	-		QHG54148
OrthoDB	1	1.010	-	-		D1412723at2759
OrthoFinder	1	1.000	-	-		FOG0000367
OrthoInspector	1	1.000	-	-		otm45461
orthoMCL	1	0.900	-	-		OOG6_100934
Panther	1	1.100	-	-	LDO	PTHR11165
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X346
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	16	15.770