Protein Alignment SkpA and skr-18

DIOPT Version :9

• Sequence 1: NP_001033818.1
• Gene: SkpA / 31016
• FlyBaseID: FBgn0025637
• Length: 162
• Species: Drosophila melanogaster
• Sequence 2: NP_741300.1
• Gene: skr-18 / 260116
• WormBaseID: WBGene00018935
• Length: 183
• Species: Caenorhabditis elegans
• Alignment Length: 161
• Identity: 52/161 - (32%)
• Similarity: 87/161 - (54%)
• Gaps: 10/161 - (6%)

  Fly     4 IKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENA-IVPLP-NVNSTILRKVLTWAHYHK- 65
            ::|.||:.|:...||:..:.|.||.|.:::.|.:.::.| |.|:| :.:...|..::.|...||
 Worm    29 LQLASSNGEVLQADIRALQLSSTISTTIKELGYDKEDCAEIKPIPVDEHEYTLDLLIKWCDQHKG 93

  Fly    66 DDPQPTEDDESKEKRTDDIISWDADFLKV-DQGTLFELILAANYLDIKGLLELTCKTVANMIKGK 129
            |||:..:.::.|:|..  |.|||..|..| ..|.|..:|.||..|||.||:....:|||:.|.||
 Worm    94 DDPEIAKAEKGKKKVV--IPSWDQHFFSVLPMGNLLAVIKAAYDLDITGLVNYGTQTVASRINGK 156

  Fly   130 TPEEIRKTFNIKKDFSPAEEEQVRKENEWCE 160
            :.||:|:.|.:.:   |.::.....:. |.:
 Worm   157 SAEEMREIFQLPE---PCQQPSTSTDT-WAD 183

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SkpA	NP_001033818.1	BTB_POZ_SKP1	4..126	CDD:349631	43/125 (34%)
		Skp1	112..159	CDD:396171	13/46 (28%)
skr-18	NP_741300.1	BTB_POZ	28..153	CDD:365784	43/125 (34%)
		Skp1	140..>169	CDD:366656	12/28 (43%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C160160702
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5201
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1412723at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11165
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	4.850